₱2,288 Find Cheap Flights from Southeast Asia to Kota Kinabalu

This is the cheapest one-way flight price found by a KAYAK user in the last 72 hours by searching for a flight to Kota Kinabalu departing on 8/24. Fares are subject to change and may not be available on all flights or dates of travel. Click the price to replicate the search for this deal.
1 adult
1 adult, Economy

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Cheap Flights from Southeast Asia to Kota Kinabalu

 
Here are some of the best deals found on KAYAK recently from the most popular airlines for return flights from Southeast Asia to Kota Kinabalu that are departing in the next months. While these flights were available on KAYAK in the last 72 hours, prices and availability are subject to change and deals may expire.
Discover the best prices for you by selecting your travel dates on KAYAK.

Recent round-trip flight deals from Southeast Asia to Kota Kinabalu

Sun, Jul 20 - Mon, Jul 21
Philippines AirAsia Logo
11:10 pm - 1:20 amMNL-BKI
2h 10mnonstop
Philippines AirAsia Logo
1:45 am - 3:55 amBKI-MNL
2h 10mnonstop
₱3,851Philippines AirAsia
Find Deal
Fri, Jul 18 - Sat, Jul 19
Philippines AirAsia Logo
11:10 pm - 1:20 amMNL-BKI
2h 10mnonstop
Philippines AirAsia Logo
1:45 am - 3:55 amBKI-MNL
2h 10mnonstop
₱3,907Philippines AirAsia
Find Deal
Sat, Sep 27 - Sun, Sep 28
 Logo
7:35 pm - 11:15 amMNL-BKI
15h 40m1 stop
 Logo
1:45 am - 3:55 amBKI-MNL
2h 10mnonstop
₱6,307
Find Deal
Thu, Sep 4 - Sat, Sep 6
 Logo
7:35 pm - 9:00 pmMNL-BKI
25h 25m1 stop
 Logo
1:45 am - 3:55 amBKI-MNL
2h 10mnonstop
₱7,591
Find Deal
Wed, Oct 8 - Mon, Oct 13
Scoot Logo
6:55 am - 7:25 pmMNL-BKI
12h 30m1 stop
Scoot Logo
8:25 pm - 6:35 pmBKI-MNL
22h 10m1 stop
₱9,489Scoot
Find Deal
Wed, Oct 8 - Mon, Oct 13
Scoot Logo
6:55 am - 7:25 pmMNL-BKI
12h 30m1 stop
Scoot Logo
8:25 pm - 6:35 pmBKI-MNL
22h 10m1 stop
₱10,493Scoot
Find Deal
Wed, Jul 2 - Wed, Jul 9
China Southern Logo
5:45 pm - 6:20 pmMNL-BKI
24h 35m1 stop
China Southern Logo
7:20 pm - 11:15 pmBKI-MNL
27h 55m1 stop
₱17,135China Southern
Find Deal
Sun, Jul 27 - Sat, Aug 2
China Southern Logo
5:45 pm - 2:30 amMNL-BKI
8h 45m1 stop
China Southern Logo
3:30 am - 10:35 amBKI-MNL
7h 05m1 stop
₱17,191China Southern
Find Deal
Tue, Jul 8 - Mon, Jul 14
Malaysia Airlines Logo
3:05 pm - 11:55 amMNL-BKI
20h 50m1 stop
Malaysia Airlines Logo
6:45 am - 9:25 pmBKI-MNL
14h 40m2 stops
₱18,196Malaysia Airlines
Find Deal
Wed, Oct 8 - Mon, Oct 13
Malaysia Airlines Logo
3:05 pm - 7:55 pmMNL-BKI
28h 50m2 stops
Malaysia Airlines Logo
11:30 am - 9:25 pmBKI-MNL
9h 55m1 stop
₱23,387Malaysia Airlines
Find Deal
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Good to know

Low seasonApril
High seasonDecember
Cheapest flight₱2,288
Best time to beat the crowds but there is an average 7% increase in price.
Most popular time to fly (20% more expensive on average)
Flight from Manila to Kota Kinabalu

FAQs for booking flights from Southeast Asia to Kota Kinabalu

  • How does KAYAK find such low prices on flights from Southeast Asia to Kota Kinabalu?

    KAYAK is a travel search engine. That means we look across the web to find the best prices we can find for our users. With over 2 billion flight queries processed yearly, we are able to display a variety of prices and options on flights from Southeast Asia to Kota Kinabalu.

  • How does KAYAK's flight Price Forecast tool help me choose the right time to buy my flight ticket from Southeast Asia to Kota Kinabalu?

    KAYAK’s flight Price Forecast tool uses historical data to determine whether the price for a flight to Kota Kinabalu from Southeast Asia is likely to change within 7 days, so travelers know whether to wait or book now.

  • What is the Hacker Fare option on flights from Southeast Asia to Kota Kinabalu?

    Hacker Fares allow you to combine one-way tickets in order to save you money over a traditional round-trip ticket. You could then fly to Kota Kinabalu with an airline and back to Southeast Asia with another airline.

  • What is KAYAK's "flexible dates" feature and why should I care when looking for a flight from Southeast Asia to Kota Kinabalu?

    Sometimes travel dates aren't set in stone. If your preferred travel dates have some wiggle room, flexible dates will show you all the options when flying to Kota Kinabalu from Southeast Asia up to 3 days before/after your preferred dates. You can then pick the flights that suit you best.

Prefer to fly non-stop from Southeast Asia to Kota Kinabalu?

Find which airlines fly direct from Southeast Asia to Kota Kinabalu Airport, which days they fly and book direct flights.

Direct departures

Southeast Asia to Kota Kinabalu

Monday

Air Canada, AirAsia, Batik Air, +25 more

Air Canada, AirAsia, +26 more

Tuesday

Air Canada, AirAsia, Batik Air, +26 more

Air Canada, AirAsia, +27 more

Wednesday

Air Busan, Air Canada, AirAsia, +25 more

Air Busan, Air Canada, +26 more

Thursday

Air Busan, Air Canada, AirAsia, +28 more

Air Busan, Air Canada, +29 more

Friday

Air Canada, AirAsia, Batik Air, +25 more

Air Canada, AirAsia, +26 more

Saturday

Air Busan, Air Canada, AirAsia, +27 more

Air Busan, Air Canada, +28 more

Sunday

Air Busan, AirAsia, Asiana Airlines, +26 more

Air Busan, AirAsia, +27 more

See more direct flights

Direct returns

Kota Kinabalu to Southeast Asia

Monday

Air Canada, AirAsia, Batik Air, +25 more

Air Canada, AirAsia, +26 more

Tuesday

Air Canada, AirAsia, Batik Air, +26 more

Air Canada, AirAsia, +27 more

Wednesday

Air Busan, Air Canada, AirAsia, +25 more

Air Busan, Air Canada, +26 more

Thursday

Air Busan, Air Canada, AirAsia, +28 more

Air Busan, Air Canada, +29 more

Friday

Air Canada, AirAsia, Batik Air, +25 more

Air Canada, AirAsia, +26 more

Saturday

Air Busan, Air Canada, AirAsia, +27 more

Air Busan, Air Canada, +28 more

Sunday

Air Busan, AirAsia, Asiana Airlines, +26 more

Air Busan, AirAsia, +27 more

See more direct flights
See more direct flights

Top 3 airlines serving from Southeast Asia to Kota Kinabalu

 
Need help choosing which airline to fly with from Southeast Asia to Kota Kinabalu? KAYAK airline reviews give an overall score for each airline based on loads of factors, including comfort, boarding, in-flight entertainment and more, to make your decision easier. See airline scores according to verified KAYAK customer reviews.
7.4
Malaysia AirlinesOverall score based on 263 reviews
6.8Entertainment
7.7Boarding
7.0Food
8.1Crew
7.5Comfort
Airline reviews

Vast improvement needed in customer service. I couldn’t get the drink of my choice during both meals (i.e. sparking water and Diet Coke). I had used plastic cups falling onto me from the tray. No eye contact when they thank you on the way out signalling an insincere thank you.

4.0 OkayAnonymous, Apr 2025KUL - LHR
Read more Malaysia Airlines reviews

Vast improvement needed in customer service. I couldn’t get the drink of my choice during both meals (i.e. sparking water and Diet Coke). I had used plastic cups falling onto me from the tray. No eye contact when they thank you on the way out signalling an insincere thank you.

Jia yung was the flight attendant that made this a miserable flight.

The flight isn’t great, as the plane has faulty with light and noise. It blinks and make noise for 8hrs non stop! Causing health and sensory issues! Causing Hazard matter to all 3 babies that on bassinet seats. This matters affected 12 passengers and the most horrible flight I ever experience. Have been flying with MAS for more 30yrs and this is the worst! Very disappointed

AC not working, just slowly blowing room temperature air. Long taxi time does not help as well. Sweating all over the whole trip.

Did not take as cancelled 3 time so took another airline

It was a 2-hour flight so they didn't have much time for serving food. There was some turbulence so they could not serve hot coffee or tea for the safety reason. Good service, good tasting food, nice plane, a little bit of delay.

The IFE is quite unconvenient if using our own device. Not all passenger brought their own earphone/headphone.

Ok, but legspace on MH0127 from Kul to Per was too small. It was not possible to tilt my seat which I don't understand because the seat in front of my could do it. So I didn't rest on the flight. Also, the crew was probably understaffed because it took very long time to take trash after the meal. Everything very different from the flight with Malaysian Airlines from London to KL.

Service / food has to be much better. Staff were not very attentive to requests. Requested for a second serve of coke and got a weird look back from the host! Was also told they don’t have extra water bottles when I requested for one before sleep! Dinner time food was very minimum and average.

An overnight Doha to KL. Great sleep, good service and tasty food in business class

Forthright communication to the customers regarding services offered and any fees involved.

Scoot is a no frills budget airline. Do not expect a legacy airline experience.

I have taken more than 50 flights in the past year and this is the worst onboard experience that I've come across. There's always a risk with budget airlines and their creative views of customer service. Having bought a standard seat, we boarded at the assigned seat - we naturally couldn't choose ourselves as that would be extra cost. After take-off, the person in the row in front leans back their seat. As a frequent flyer, I believe this is their right, so I try to lean my seat back as well to have the same space available. However, my standard seat could not lean back, as the row behind was an exit row. As I had paid for a standard seat, not a less space than standard, I moved to the completely free row behind me. This was not allowed, as due to extra legroom, this would cost extra. Subsequently spent the next 30 mins discussing this scenario with the crew. I have no issues with budget airlines and additional charges, but if I pay for a standard seat, I want a standard seat, not one with less space. As you do not offer me a discount for the less space, do not try and charge me a premium, when I find a free seat with more space. It works both ways Scoot.

Finishes were quite worn, including our very scratched up seatback. No entertainment available, and the WiFi (even for “ScootHub”) was very slow. Crew were somewhat friendly.

Food & lower the prices. Look at Air Asia food look better & affordable

Not a frequent user of their website booking. Booked my check-in baggage and only realized that I did not book my check in baggage for return flight. The receipt was not clear in identifying that as well. Was charged exorbitantly at check in counter. Bad taste for sure when it is a business trip and not leisure trip. Baggage was delayed for more than an hour at belt back in SG.

Boarding took forever. It's also weird that we paid more (for preferred seats) to get on the plane last. Inflight WiFi never worked the entire trip. I want my money back.

The cosmetic condition was pretty run down. The carpets were badly worn out. Even the paint on the wings was chipped and peeled! Looks like they are running these 787s to the ground..

WiFi didn’t work on both sectors so made killing time harder - planes clean modern and good flight crew - would do again if WiFi works

6hrs fly they dont give you a glass of water from seoul to singapore need to buy drink and food plus they charge for bag on international fly is always Free 1 bag from seoul to singapore is Not a local fly you are traveling true asia same story from singapore to Bali no water drink after payment for bag drink cost more the regular airline Well never use this company again we use regular company like Delta korea japan China and even scoot parent company Singapore Air

The flight was delayed by an hour . Traveling with 75 year old father was difficult and then when he asked for water he was asked to purchase :-) . Overall just an ok experience.

Overall service is good, the only thing I would like airasia to improve is there seating. Their seat handles are broken as well as the back rest

Boarding with air asia is excellent via organized lines by zone except when there is only 1 gate agent and no scanner, only by tearing tickets??? Crazy

The flight was supposed to depart at 9:25. It departed at 9:00. Im glad we were early and did not miss it.

They wouldn't even allow us to bring water from the fountain on board the aircraft.

Premium seats should have legroom this one didn't have it. I had 2 free checked bag but I got charged for while it shows on my reservation

Terrible airline! This airline just ruined our family vacation due to a 12 hours delay as a result of their operational issues.

Too many flight delays. Airport terminal serving Boracay needs upgrades.

Over 6 hours delayed.. using philippine air fleet planes are beat up dirty and uncomfortable. Have been flying air asia for over 4 years from Manila to Tokyo and kansai as well as several local flights from Manila to Bacolod and Cebu.. 3 planes were down for maintenance and caused havoc.. need to invest in new fleet or seriously clean and upgrade the existing fleet. Will not be flying anymore until fixed. Several options out there now to choose from as air asia prices have skyrocketed.. no point in using them anymore . Severally upset passenger here. They can’t even manage the queuing of Zones for boarding as it’s a crab fest free for all now. No discipline and let the passengers in line to board just run into any lane possible.. and priority luggage?? Forget it I’ve paid for it for the last 6 flights and never got it first.. air asia has turned into a expensive joke.. use Cebu pacific or zip air now..

We had three flight delays before eventually taking off 3 hours late. Inflight service was very limited, but it was a relatively short flight. Luggage was delivered promptly.

Everything you need to know for your flight to Kota Kinabalu

Information on the airport you'll fly into in Kota Kinabalu

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