₱2,829 Find Cheap Flights from Southeast Asia to Kota Kinabalu

This is the cheapest one-way flight price found by a KAYAK user in the last 72 hours by searching for a flight to Kota Kinabalu departing on 3/11. Fares are subject to change and may not be available on all flights or dates of travel. Click the price to replicate the search for this deal.
1 adult
1 adult, Economy, 0 bags

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Everything you should know

Cheapest round-trip
₱6,071
Overall average: ₱7,250
Philippines AirAsia
Sun 3/22Fri 3/27
MNL - BKI • Non-stop
Cheapest one-way
₱2,829
Typical prices: ₱3,242-₱3,714
Philippines AirAsia
Wed 3/11
MNL - BKI • Non-stop
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We hope you love your trip to Kota Kinabalu!
Flight Deals
Useful Info
Flight Deals

Cheap Flights from Southeast Asia to Kota Kinabalu

 
Here are some of the best deals found on KAYAK recently from the most popular airlines for return flights from Southeast Asia to Kota Kinabalu that are departing in the next months. While these flights were available on KAYAK in the last 72 hours, prices and availability are subject to change and deals may expire.
Discover the best prices for you by selecting your travel dates on KAYAK.

Recent round-trip flight deals from Southeast Asia to Kota Kinabalu

Sun, Mar 22 - Fri, Mar 27
Philippines AirAsia Logo
4:15 pm - 6:30 pm
MNL
-
BKI
2h 15mnonstop
Philippines AirAsia Logo
7:15 pm - 9:15 pm
BKI
-
MNL
2h 00mnonstop
₱6,071Philippines AirAsia
Wed, Mar 11 - Wed, Mar 18
Philippines AirAsia Logo
4:15 pm - 6:30 pm
MNL
-
BKI
2h 15mnonstop
Philippines AirAsia Logo
6:55 pm - 8:55 pm
BKI
-
MNL
2h 00mnonstop
₱7,073Philippines AirAsia
Sun, Feb 22 - Mon, Mar 2
Multiple Airlines Logo
3:20 am - 6:30 pm
CEB
-
BKI
15h 10m
1 stop
Multiple Airlines Logo
6:55 pm - 4:30 am
BKI
-
CEB
9h 35m
1 stop
₱10,080Multiple Airlines
Wed, Mar 11 - Wed, Mar 18
Multiple Airlines Logo
6:30 am - 7:00 pm
MNL
-
BKI
12h 30m
1 stop
Multiple Airlines Logo
6:55 pm - 8:55 pm
BKI
-
MNL
2h 00mnonstop
₱10,257Multiple Airlines
Sun, Feb 22 - Mon, Mar 2
Multiple Airlines Logo
2:20 am - 6:30 pm
CEB
-
BKI
16h 10m
1 stop
Multiple Airlines Logo
6:00 am - 9:25 pm
BKI
-
CEB
15h 25m
2 stops
₱10,374Multiple Airlines
Sun, Mar 22 - Fri, Mar 27
Multiple Airlines Logo
4:15 pm - 6:30 pm
MNL
-
BKI
2h 15mnonstop
Multiple Airlines Logo
8:00 pm - 6:30 pm
BKI
-
MNL
22h 30m
1 stop
₱10,728Multiple Airlines
Sun, Mar 22 - Fri, Mar 27
Scoot Logo
6:30 am - 11:05 am
MNL
-
BKI
28h 35m
1 stop
Scoot Logo
8:00 pm - 6:30 pm
BKI
-
MNL
22h 30m
1 stop
₱11,671Scoot
Sat, Mar 21 - Mon, Mar 23
Scoot Logo
7:30 pm - 7:00 pm
MNL
-
BKI
23h 30m
1 stop
Scoot Logo
8:00 pm - 5:30 am
BKI
-
MNL
9h 30m
1 stop
₱11,966Scoot
Sat, Feb 28 - Wed, Mar 4
Philippine Airlines Logo
5:15 pm - 6:20 pm
ZAM
-
BKI
25h 05m
2 stops
Philippine Airlines Logo
5:20 am - 6:55 am
BKI
-
ZAM
25h 35m
2 stops
₱30,180Philippine Airlines
Wed, Apr 8 - Fri, Apr 10
Philippine Airlines Logo
2:00 am - 5:00 pm
DVO
-
BKI
15h 00m
2 stops
Philippine Airlines Logo
4:20 pm - 5:20 am
BKI
-
DVO
37h 00m
2 stops
₱30,239Philippine Airlines
Useful Info

Good to know

Low seasonJanuary
Cheapest flight₱2,829
Best time to beat the crowds but there is an average 33% increase in price.
Most popular time to fly and prices are also 20% lower on average.
Flight from Manila to Kota Kinabalu

FAQs for booking flights from Southeast Asia to Kota Kinabalu

  • How does KAYAK find such low prices on flights from Southeast Asia to Kota Kinabalu?

    KAYAK is a travel search engine. That means we look across the web to find the best prices we can find for our users. With over 2 billion flight queries processed yearly, we are able to display a variety of prices and options on flights from Southeast Asia to Kota Kinabalu.

  • How does KAYAK's flight Price Forecast tool help me choose the right time to buy my flight ticket from Southeast Asia to Kota Kinabalu?

    KAYAK’s flight Price Forecast tool uses historical data to determine whether the price for a flight to Kota Kinabalu from Southeast Asia is likely to change within 7 days, so travelers know whether to wait or book now.

  • What is the Hacker Fare option on flights from Southeast Asia to Kota Kinabalu?

    Hacker Fares allow you to combine one-way tickets in order to save you money over a traditional round-trip ticket. You could then fly to Kota Kinabalu with an airline and back to Southeast Asia with another airline.

  • What is KAYAK's "flexible dates" feature and why should I care when looking for a flight from Southeast Asia to Kota Kinabalu?

    Sometimes travel dates aren't set in stone. If your preferred travel dates have some wiggle room, flexible dates will show you all the options when flying to Kota Kinabalu from Southeast Asia up to 3 days before/after your preferred dates. You can then pick the flights that suit you best.

Reviews of the top airline flying from Southeast Asia to Kota Kinabalu

 
Need help choosing which airline to fly with from Southeast Asia to Kota Kinabalu? KAYAK airline reviews give an overall score for each airline based on loads of factors, including comfort, boarding, in-flight entertainment and more, to make your decision easier. See airline scores according to verified KAYAK customer reviews.
6.7
Philippines AirAsiaOverall score based on 120 reviews
6.7Boarding
5.6Entertainment
6.4Food
7.5Crew
6.6Comfort
Airline reviews

This flight was excellent in all ways if they could repeat it consistently they would grow immediately

10.0 ExcellentJINJI JOO, Jan 2026
MNL - CEB
Read more Philippines AirAsia reviews

This flight was excellent in all ways if they could repeat it consistently they would grow immediately

Philippines AirAsia is never on-time flight, delayed 3 hours. Everything else was fine though.

Service it was good Lower airfare and discount for loyal customer

Not a good experience. They did not have the food I ordered in advance. The crew is not offer a second snack on a 5 hour flight. The WiFi was either not working or was very difficult to connect to.

The flight was delayed by an hour . Traveling with 75 year old father was difficult and then when he asked for water he was asked to purchase :-) . Overall just an ok experience.

Overall service is good, the only thing I would like airasia to improve is there seating. Their seat handles are broken as well as the back rest

Boarding with air asia is excellent via organized lines by zone except when there is only 1 gate agent and no scanner, only by tearing tickets??? Crazy

The flight was supposed to depart at 9:25. It departed at 9:00. Im glad we were early and did not miss it.

They wouldn't even allow us to bring water from the fountain on board the aircraft.

Premium seats should have legroom this one didn't have it. I had 2 free checked bag but I got charged for while it shows on my reservation

Everything you need to know for your flight to Kota Kinabalu

Information on the airport you'll fly into in Kota Kinabalu

Kota Kinabalu (BKI)