₱2,971 Find Cheap Flights from Southeast Asia to Kota Kinabalu

This is the cheapest one-way flight price found by a KAYAK user in the last 72 hours by searching for a flight to Kota Kinabalu departing on 4/6. Fares are subject to change and may not be available on all flights or dates of travel. Click the price to replicate the search for this deal.
1 adult
1 adult, Economy, 0 bags

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Cheap Flights from Southeast Asia to Kota Kinabalu

 
Here are some of the best deals found on KAYAK recently from the most popular airlines for return flights from Southeast Asia to Kota Kinabalu that are departing in the next months. While these flights were available on KAYAK in the last 72 hours, prices and availability are subject to change and deals may expire.
Discover the best prices for you by selecting your travel dates on KAYAK.

Recent round-trip flight deals from Southeast Asia to Kota Kinabalu

Fri, Apr 10 - Sun, Apr 12
Philippines AirAsia Logo
11:10 pm - 1:20 am
MNL
-
BKI
2h 10mnonstop
Philippines AirAsia Logo
1:45 am - 3:55 am
BKI
-
MNL
2h 10mnonstop
₱5,822Philippines AirAsia
Fri, Apr 10 - Mon, Apr 13
Philippines AirAsia Logo
11:10 pm - 1:20 am
MNL
-
BKI
2h 10mnonstop
Philippines AirAsia Logo
1:45 am - 3:55 am
BKI
-
MNL
2h 10mnonstop
₱5,941Philippines AirAsia
Fri, Apr 10 - Mon, Apr 13
Philippines AirAsia Logo
11:10 pm - 1:20 am
MNL
-
BKI
2h 10mnonstop
Philippines AirAsia Logo
1:45 am - 3:55 am
BKI
-
MNL
2h 10mnonstop
₱6,000Philippines AirAsia
Sun, Apr 12 - Fri, Apr 17
Philippines AirAsia Logo
11:10 pm - 1:20 am
MNL
-
BKI
2h 10mnonstop
Philippines AirAsia Logo
1:45 am - 3:55 am
BKI
-
MNL
2h 10mnonstop
₱6,060Philippines AirAsia
Wed, Apr 22 - Wed, Apr 29
Multiple Airlines Logo
12:55 pm - 9:00 pm
CEB
-
BKI
8h 05m
1 stop
Multiple Airlines Logo
6:00 am - 9:25 pm
BKI
-
CEB
15h 25m
1 stop
₱9,030Multiple Airlines
Sat, Aug 1 - Wed, Aug 5
Multiple Airlines Logo
12:55 pm - 9:00 pm
CEB
-
BKI
8h 05m
1 stop
Multiple Airlines Logo
10:10 am - 9:25 pm
BKI
-
CEB
11h 15m
1 stop
₱9,149Multiple Airlines
Thu, May 7 - Sun, May 10
Scoot Logo
7:20 pm - 7:45 pm
DVO
-
BKI
24h 25m
1 stop
Scoot Logo
12:15 pm - 5:55 am
BKI
-
DVO
17h 40m
1 stop
₱19,308Scoot
Mon, Aug 17 - Sat, Aug 22
Philippine Airlines Logo
2:00 am - 5:00 pm
DVO
-
BKI
15h 00m
2 stops
Philippine Airlines Logo
5:20 am - 8:25 pm
BKI
-
DVO
15h 05m
2 stops
₱28,636Philippine Airlines
Mon, Aug 17 - Sat, Aug 22
Philippine Airlines Logo
2:00 am - 3:35 pm
DVO
-
BKI
13h 35m
2 stops
Philippine Airlines Logo
6:50 am - 10:05 pm
BKI
-
DVO
15h 15m
2 stops
₱28,754Philippine Airlines
Tue, Aug 18 - Sat, Aug 22
Scoot Logo
6:45 am - 8:50 am
DVO
-
BKI
26h 05m
1 stop
Scoot Logo
8:45 pm - 5:45 am
BKI
-
DVO
9h 00m
1 stop
₱36,359Scoot
Useful Info

Good to know

Low seasonJanuary
Cheapest flight₱2,971
Best time to beat the crowds but there is an average 40% increase in price.
Most popular time to fly (27% more expensive on average)
Flight from Manila to Kota Kinabalu

FAQs for booking flights from Southeast Asia to Kota Kinabalu

  • How does KAYAK find such low prices on flights from Southeast Asia to Kota Kinabalu?

    KAYAK is a travel search engine. That means we look across the web to find the best prices we can find for our users. With over 2 billion flight queries processed yearly, we are able to display a variety of prices and options on flights from Southeast Asia to Kota Kinabalu.

  • How does KAYAK's flight Price Forecast tool help me choose the right time to buy my flight ticket from Southeast Asia to Kota Kinabalu?

    KAYAK’s flight Price Forecast tool uses historical data to determine whether the price for a flight to Kota Kinabalu from Southeast Asia is likely to change within 7 days, so travelers know whether to wait or book now.

  • What is the Hacker Fare option on flights from Southeast Asia to Kota Kinabalu?

    Hacker Fares allow you to combine one-way tickets in order to save you money over a traditional round-trip ticket. You could then fly to Kota Kinabalu with an airline and back to Southeast Asia with another airline.

  • What is KAYAK's "flexible dates" feature and why should I care when looking for a flight from Southeast Asia to Kota Kinabalu?

    Sometimes travel dates aren't set in stone. If your preferred travel dates have some wiggle room, flexible dates will show you all the options when flying to Kota Kinabalu from Southeast Asia up to 3 days before/after your preferred dates. You can then pick the flights that suit you best.

Reviews of the top airline flying from Southeast Asia to Kota Kinabalu

 
Need help choosing which airline to fly with from Southeast Asia to Kota Kinabalu? KAYAK airline reviews give an overall score for each airline based on loads of factors, including comfort, boarding, in-flight entertainment and more, to make your decision easier. See airline scores according to verified KAYAK customer reviews.
6.8
Philippines AirAsiaOverall score based on 125 reviews
7.6Crew
6.7Comfort
6.4Food
6.8Boarding
5.6Entertainment
Airline reviews

This flight was excellent in all ways if they could repeat it consistently they would grow immediately

10.0 ExcellentJINJI JOO, Jan 2026
MNL - CEB
Read more Philippines AirAsia reviews

This flight was excellent in all ways if they could repeat it consistently they would grow immediately

Philippines AirAsia is never on-time flight, delayed 3 hours. Everything else was fine though.

Service it was good Lower airfare and discount for loyal customer

Not a good experience. They did not have the food I ordered in advance. The crew is not offer a second snack on a 5 hour flight. The WiFi was either not working or was very difficult to connect to.

The flight was delayed by an hour . Traveling with 75 year old father was difficult and then when he asked for water he was asked to purchase :-) . Overall just an ok experience.

Overall service is good, the only thing I would like airasia to improve is there seating. Their seat handles are broken as well as the back rest

Boarding with air asia is excellent via organized lines by zone except when there is only 1 gate agent and no scanner, only by tearing tickets??? Crazy

The flight was supposed to depart at 9:25. It departed at 9:00. Im glad we were early and did not miss it.

They wouldn't even allow us to bring water from the fountain on board the aircraft.

Premium seats should have legroom this one didn't have it. I had 2 free checked bag but I got charged for while it shows on my reservation

Everything you need to know for your flight to Kota Kinabalu

Information on the airport you'll fly into in Kota Kinabalu

Kota Kinabalu (BKI)