MNL - BKI

₱4,715 Find Cheap Flights from Manila to Kota Kinabalu - Compare and Save

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Everything you should know

Cheapest round-trip
₱9,178
Typical prices: ₱7,184–₱11,759
Philippines AirAsia
Tue 11/6Thu 11/8
MNL - BKI • Non-stop
Cheapest one-way
₱4,715
Typical prices: ₱3,448-₱6,649
Philippines AirAsia
Fri 11/30
MNL - BKI • Non-stop
Direct flights
You can fly nonstop with Philippines AirAsia. Average duration is 2h 06m
Direct flights
+1
Direct flights
+1
Avoid delays
Most punctual • 80% on-time
Best time • Fewest delays
Insights
Insights
When to book
in advance
Our data shows that travelers who book at least 19 weeks in advance save around 41% compared to booking last minute.
Insights
Insights
When to travel
Cheapest • 20% price drop
Most popular
Good to know
+1
Good to know
+1
Top layover airports
Cheapest • Avg ₱15,631 (round-trip)
Shortest trip • 8h 32m (one-way)
Insights
Insights
Start a new search
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We hope you love your trip to Kota Kinabalu!
Flight Deals
Booking Insights
Flight Deals

Cheap Flights from Manila to Kota Kinabalu (MNL-BKI)

 
Discover the best prices for you by selecting your travel dates on KAYAK.

Recent round-trip flight deals from Manila to Kota Kinabalu

Fri, Nov 6 - Sun, Nov 8
Philippines AirAsia Logo
4:15 pm - 6:20 pmMNL  Manila Ninoy Aquino Intl-BKI Kota Kinabalu
2h 05mnonstop
Philippines AirAsia Logo
7:05 pm - 9:15 pmBKI  Kota Kinabalu-MNL Manila Ninoy Aquino Intl
2h 10mnonstop
₱9,178Philippines AirAsia
20 hours ago
Fri, Nov 6 - Sun, Nov 8
Philippines AirAsia Logo
4:15 pm - 6:20 pmMNL  Manila Ninoy Aquino Intl-BKI Kota Kinabalu
2h 05mnonstop
Philippines AirAsia Logo
7:05 pm - 9:15 pmBKI  Kota Kinabalu-MNL Manila Ninoy Aquino Intl
2h 10mnonstop
₱9,304Philippines AirAsia
22 hours ago
Fri, Nov 13 - Sun, Nov 15
Philippines AirAsia Logo
4:15 pm - 6:20 pmMNL  Manila Ninoy Aquino Intl-BKI Kota Kinabalu
2h 05mnonstop
Philippines AirAsia Logo
7:05 pm - 9:15 pmBKI  Kota Kinabalu-MNL Manila Ninoy Aquino Intl
2h 10mnonstop
₱9,304Philippines AirAsia
17 hours ago
Wed, Nov 4 - Sun, Nov 8
Philippines AirAsia Logo
4:15 pm - 6:20 pmMNL  Manila Ninoy Aquino Intl-BKI Kota Kinabalu
2h 05mnonstop
Philippines AirAsia Logo
7:05 pm - 9:15 pmBKI  Kota Kinabalu-MNL Manila Ninoy Aquino Intl
2h 10mnonstop
₱9,493Philippines AirAsia
11 hours ago
Wed, Nov 18 - Fri, Nov 20
Philippines AirAsia Logo
4:15 pm - 6:20 pmMNL  Manila Ninoy Aquino Intl-BKI Kota Kinabalu
2h 05mnonstop
Philippines AirAsia Logo
7:05 pm - 9:15 pmBKI  Kota Kinabalu-MNL Manila Ninoy Aquino Intl
2h 10mnonstop
₱10,058Philippines AirAsia
2 days ago
Mon, Nov 16 - Fri, Nov 20
Philippines AirAsia Logo
4:15 pm - 6:20 pmMNL  Manila Ninoy Aquino Intl-BKI Kota Kinabalu
2h 05mnonstop
Philippines AirAsia Logo
7:05 pm - 9:15 pmBKI  Kota Kinabalu-MNL Manila Ninoy Aquino Intl
2h 10mnonstop
₱10,310Philippines AirAsia
3+ days ago
Fri, Mar 26 - Sun, Mar 28
Philippines AirAsia Logo
4:15 pm - 6:20 pmMNL  Manila Ninoy Aquino Intl-BKI Kota Kinabalu
2h 05mnonstop
Philippines AirAsia Logo
1:45 am - 3:55 amBKI  Kota Kinabalu-MNL Manila Ninoy Aquino Intl
2h 10mnonstop
₱10,624Philippines AirAsia
2 days ago
Sun, Nov 29 - Sun, Dec 6
Philippines AirAsia Logo
4:15 pm - 6:20 pmMNL  Manila Ninoy Aquino Intl-BKI Kota Kinabalu
2h 05mnonstop
Philippines AirAsia Logo
7:05 pm - 9:15 pmBKI  Kota Kinabalu-MNL Manila Ninoy Aquino Intl
2h 10mnonstop
₱11,630Philippines AirAsia
3+ days ago
Sat, Nov 21 - Mon, Nov 23
Multiple Airlines Logo
6:30 am - 11:10 amMNL  Manila Ninoy Aquino Intl-BKI Kota Kinabalu
28h 40m1 stop Singapore Changi
Multiple Airlines Logo
7:05 pm - 9:15 pmBKI  Kota Kinabalu-MNL Manila Ninoy Aquino Intl
2h 10mnonstop
₱12,762Multiple Airlines
2 days ago
Wed, Nov 4 - Sun, Nov 8
Multiple Airlines Logo
6:30 am - 7:00 pmMNL  Manila Ninoy Aquino Intl-BKI Kota Kinabalu
12h 30m1 stop Singapore Changi
Multiple Airlines Logo
7:05 pm - 9:15 pmBKI  Kota Kinabalu-MNL Manila Ninoy Aquino Intl
2h 10mnonstop
₱13,453Multiple Airlines
11 hours ago
Booking Insights

Price, demand, and travel trends for Manila to Kota Kinabalu flights

Use KAYAK data on prices, travel dates, airlines and seasonal trends to compare options and book flights with more confidence.

How much is a round-trip flight from Manila to Kota Kinabalu?

Round-trip flights from Manila to Kota Kinabalu typically range from ₱7,184 to ₱11,759. The lowest price found in the past 5 days was ₱9,178, on Philippines AirAsia.

What's the cheapest day of the week to fly from Manila to Kota Kinabalu?

Based on deals KAYAK users found in the last 12 months, Sunday is the cheapest day of the week to fly from Manila to Kota Kinabalu. It’s 6% cheaper than the average day, while Saturday is the most expensive, with prices 53% higher.

What’s the cheapest month to fly from Manila to Kota Kinabalu?

•November is the cheapest month to fly from Manila to Kota Kinabalu at ₱7,544 round-trip.
•August (₱11,001) and December (₱10,624) are the most expensive months.
•The price difference between flying in the cheapest and most expensive months is 45% on average.
This is based on KAYAK aggregated and averaged internal data over the past 12 months.

When are flights from Manila to Kota Kinabalu the cheapest?

Flights from Manila to Kota Kinabalu are cheapest 19 weeks before departure. Booking in this window typically costs about 41% less than the average last-minute fare (within 2 weeks of the flight), based on KAYAK data.

Key details for Manila to Kota Kinabalu flights

Low season

September

Cheapest flight

₱4,715
Beat the crowds with an average 45% drop in travelers.
The most popular month to fly with an average 25% increase in travelers.
One-way flight from Manila to Kota Kinabalu

When to book flights from Manila to Kota Kinabalu

Are your dates flexible? Find out the best times to travel from Manila to Kota Kinabalu based on our flight data from the last year. Discover the cheapest month and even day to fly.
Estimated round-trip price

Your Manila to Kota Kinabalu flight questions, answered

Find helpful answers about this route, including flight times, airports, airlines and booking tips.

  • What are the earliest and latest flights from Manila to Kota Kinabalu?

    These are the earliest and latest flight times available from Manila to Kota Kinabalu:

    • Earliest: departs at 4:15 pm and lands at 6:21 pm
    • Latest: departs at 11:10 pm and lands at 1:16 am.

    The flight takes about 2h 06m.

  • What cabin classes can I book on flights from Manila to Kota Kinabalu?

    Two cabin classes are available on flights from Manila to Kota Kinabalu:

    • Economy Class
    • Business Class

  • How long is a flight from Manila to Kota Kinabalu?

    A nonstop flight from Manila to Kota Kinabalu takes 2h 06m, covering 1,764 km.

  • Do I need a passport to fly from Manila to Kota Kinabalu?

    Yes, a valid passport is required for this international route. Many destinations require at least six months of validity beyond your travel dates. Check your passport expiry well before booking.

  • How much should I expect to pay for a Manila to Kota Kinabalu flight?

    Round-trip flights from Manila to Kota Kinabalu range from ₱7,184 to ₱11,759, with an average of ₱9,455 over the past 12 months. Anything below ₱7,184 counts as a good deal.

  • How expensive are last-minute Manila to Kota Kinabalu flights?

    Last-minute fares on this route (booked within two weeks of departure) run 12% above the ₱9,455 route average. Book 19 weeks before departure for the lowest fares.

  • How much can I save by taking a layover when flying from Manila to Kota Kinabalu?

    On this route, direct flights are cheaper than layover options on average. Direct fares average ₱8,968 round-trip, compared to ₱15,631 via a layover through Singapore Changi (SIN).

  • How does on-time performance compare across airlines flying from Manila to Kota Kinabalu?

    Philippines AirAsia is the only airline operating Manila to Kota Kinabalu flights. 80% of its flights are on time.

  • What is the standard checked bag allowance on flights from Manila to Kota Kinabalu?

    There is no standard. Checked-bag policies vary by airline on this route. Most carriers charge ₱1,367–₱6,286 for the first checked bag in economy. Premium fares and elite-status bookings typically include a free checked bag.

  • Which aircraft model is used most often on flights from Manila to Kota Kinabalu?

    The Airbus A320-100/200 family is used most often on this route, operated mainly by Philippines AirAsia. Other aircraft seen on the route include Airbus A321neo variants.

  • How are flight departures from Manila to Kota Kinabalu spread across the day?

    Afternoon is the busiest departure period on Manila to Kota Kinabalu flights, with 100% of flights leaving in that window. Morning departures account for 0%, evening flights for 0%, and night flights for 0%.

  • How are flight prices from Manila to Kota Kinabalu looking right now?

    One-way fares from Manila to Kota Kinabalu are currently higher than usual. Average one-way flight prices are about ₱5,092, which is 12% above the typical average for this route.

  • Which car rental options are available at Kota Kinabalu Airport (BKI)?

    Kota Kinabalu Airport (BKI) hosts 5 major car rental companies, with daily rates starting from around ₱1,080 for economy cars. Top options include:

    • keddy by Europcar
    • GREEN MOTION
    • Europcar
    • MKAZ
    • Suria Car Rental

  • Which airports can I use when flying from Manila to Kota Kinabalu?

    Flights from Manila to Kota Kinabalu usually depart from Manila Ninoy Aquino Intl (MNL) and arrive at Kota Kinabalu (BKI).

  • What time of day has the fewest delays on flights from Manila to Kota Kinabalu?

    Night flights have the fewest delays on this route, while afternoon departures tend to have the most.

  • At what point is a flight from Manila to Kota Kinabalu considered delayed?

    A flight is considered delayed when it departs 15 minutes or more after its scheduled time. This is the standard used by the US Department of Transportation and most airline industry reporting. On the Manila to Kota Kinabalu route, 20% of flights were delayed in the past 3 months, with delays averaging 2h 09m.

  • Which airports do connecting flights from Manila to Kota Kinabalu pass through?

    One-stop flights from Manila to Kota Kinabalu most commonly connect through:

    • Kuala Lumpur Intl (KUL) - 44% of one-stop connections
    • Singapore Changi (SIN) - 36% of one-stop connections
    • Bandar Seri Begawan Brunei Intl (BWN) - 8% of one-stop connections
    • Hong Kong Intl (HKG) - 8% of one-stop connections

  • Can I save money by using flexible dates for flights from Manila to Kota Kinabalu?

    Yes. Flexible dates can save you up to 39% on flights from Manila to Kota Kinabalu. Sunday is the cheapest departure day at ₱8,927 round-trip on average, while Saturday is the most expensive at ₱14,459, a difference of ₱5,532.

    Cheaper weekend fares like these are typical of routes dominated by weekday business travel.

  • What airlines fly from Manila to Kota Kinabalu?

    Only Philippines AirAsia operates flights between Manila and Kota Kinabalu.

  • How much time can I save by choosing a different layover airport from Manila to Kota Kinabalu?

    Flying via Guangzhou Baiyun (CAN) gives the shortest average 1-stop total travel time at 8h 32m, compared with 8h 47m via Kuala Lumpur Intl (KUL) and 15h 43m via Singapore Changi (SIN).

  • Which airlines include bags at no extra cost on Manila to Kota Kinabalu flights?

    Here are some options for this route, based on selected ticket types and cabin classes:

    • Philippines AirAsia: a cabin bag and a checked bag in Economy Class

    Bag allowance can vary by ticket type, cabin class, route and airline, so always check the fare details before booking.

Your guide to booking Manila to Kota Kinabalu flights

Get tips on when to book, when to fly and what to know before your trip.
  • If your dates are flexible, aim for a Sunday departure and avoid flying on Saturday. On this route, Sunday flights average ₱8,927, about ₱5,532 less than Saturday fares (38% savings) based on the last 12 months.
  • For the best chance at a low fare, aim to book around 19 weeks before you fly. On this route, that window historically saves about 41% versus last-minute pricing (KAYAK booking data, last 12 months).
  • If you can choose when to travel, plan your Manila to Kota Kinabalu trip for November. Fares historically average ₱7,544 round-trip in that month - typically ₱3,458 less than the most expensive month, which is August (based on the last 12 months).
  • If you're arriving late at night and need somewhere to stay, check out these hotels close to Kota Kinabalu Airport.

    • Goldenhill Hotel

Prefer to fly non-stop from Manila Ninoy Aquino Intl to Kota Kinabalu?

 
Find which airlines fly direct from Manila Ninoy Aquino Intl Airport to Kota Kinabalu Airport, which days they fly and book direct flights.

Direct departures

Manila Ninoy Aquino Intl to Kota Kinabalu

Monday

Philippines AirAsia

Philippines AirAsia

Wednesday

Philippines AirAsia

Philippines AirAsia

Friday

Philippines AirAsia

Philippines AirAsia

Sunday

Philippines AirAsia

Philippines AirAsia

See more direct flights

Direct returns

Kota Kinabalu to Manila Ninoy Aquino Intl

Monday

Philippines AirAsia

Philippines AirAsia

Wednesday

Philippines AirAsia

Philippines AirAsia

Friday

Philippines AirAsia

Philippines AirAsia

Sunday

Philippines AirAsia

Philippines AirAsia

See more direct flights

More options for your flight from Manila to Kota Kinabalu

Complete your trip to Kota Kinabalu with a hotel stay or car rental