How do I know if a flight to Labuan Bajo is a good deal?

A good deal on a flight to Labuan Bajo is around ₱22,430 round-trip. This fare is in the lowest 25% of round-trip prices searched on KAYAK, averaged across the cities most often searched as origins by KAYAK users.

Which airlines should I consider for flights to Labuan Bajo?

Scoot is the most popular airline with KAYAK users flying to Labuan Bajo and has the best on-time record at the destination's main airport.

What is the cheapest flight to Labuan Bajo?

Manila to Labuan Bajo is the cheapest route at ₱26,636 round-trip, found in the past 5 days on KAYAK. KAYAK data shows this is also the most popular route.

How much is a flight to Labuan Bajo?

On average, a round-trip flight from the Philippines to Labuan Bajo costs ₱40,125, based on KAYAK data over the past 12 months. Round-trip fares from Manila average ₱47,212.

What is the cheapest time of day to fly to Labuan Bajo?

Afternoon flights to Labuan Bajo are the cheapest at ₱22,417 round-trip on average. Morning flights are the most expensive at ₱47,227.

What are the most popular airlines flying to Labuan Bajo?

Scoot is the only airline flying to Labuan Bajo on KAYAK.

₱10,957 CHEAP FLIGHTS to Labuan Bajo in 2026/27

Save 31% or more on flights. Compare deals from all over the web.

Never overpay with our price tracking tools.

Filter searches by price, airline and more to find your best flights.

Cheapest round-trip

₱26,636

Typical prices: ₱22,430–₱47,212

Multiple Airlines

Fri 11/2Mon 11/5

MNL - LBJ • 1 stop

Cheapest one-way

₱10,957

Typical prices: ₱12,992-₱28,887

AirAsia

Fri 11/30

MNL - LBJ • 1 stop

Top airlines

Scoot

Best reviews • Score: 6.7

Airline reviews

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We hope you love your trip to Labuan Bajo!

Flight Deals

Cheap Flights to Labuan Bajo

Discover the best prices for you by selecting your travel dates on KAYAK.

Round-trip

One-way

All Flight Deals

Recent round-trip flight deals to Labuan Bajo

Mon, Nov 2 - Thu, Nov 5

7:55 pm - 8:20 amManila Manila Ninoy Aquino Intl-Labuan Bajo Labuan Bajo Mutiara

12h 25m1 stop Denpasar Bali Ngurah Rai

8:45 am - 5:15 amLabuan Bajo Labuan Bajo Mutiara-Manila Manila Ninoy Aquino Intl

20h 30m1 stop Denpasar Bali Ngurah Rai

₱26,636Multiple Airlines

3+ days ago

Sun, Nov 29 - Mon, Dec 7

3:45 am - 1:00 pmManila Manila Ninoy Aquino Intl-Labuan Bajo Labuan Bajo Mutiara

9h 15m1 stop Denpasar Bali Ngurah Rai

9:50 am - 5:20 amLabuan Bajo Labuan Bajo Mutiara-Manila Manila Ninoy Aquino Intl

19h 30m1 stop Denpasar Bali Ngurah Rai

₱26,699Multiple Airlines

3+ days ago

Mon, Nov 9 - Fri, Nov 13

11:05 pm - 2:25 pmManila Manila Ninoy Aquino Intl-Labuan Bajo Labuan Bajo Mutiara

15h 20m1 stop Kuala Lumpur Intl

8:45 am - 5:15 amLabuan Bajo Labuan Bajo Mutiara-Manila Manila Ninoy Aquino Intl

20h 30m1 stop Denpasar Bali Ngurah Rai

₱27,203Multiple Airlines

2 days ago

Mon, Nov 16 - Mon, Nov 23

11:05 pm - 2:25 pmManila Manila Ninoy Aquino Intl-Labuan Bajo Labuan Bajo Mutiara

15h 20m1 stop Kuala Lumpur Intl

5:05 pm - 6:45 amLabuan Bajo Labuan Bajo Mutiara-Manila Manila Ninoy Aquino Intl

13h 40m1 stop Jakarta Soekarno-Hatta Intl

₱27,518Multiple Airlines

1 day ago

Sun, Nov 29 - Mon, Dec 7

3:45 am - 1:00 pmManila Manila Ninoy Aquino Intl-Labuan Bajo Labuan Bajo Mutiara

9h 15m1 stop Denpasar Bali Ngurah Rai

8:45 am - 10:25 pmLabuan Bajo Labuan Bajo Mutiara-Manila Manila Ninoy Aquino Intl

13h 40m2 stops Denpasar Bali Ngurah Rai Kuala Lumpur Intl

₱28,399Multiple Airlines

3+ days ago

Sun, Nov 8 - Fri, Nov 13

4:00 am - 6:00 pmManila Manila Ninoy Aquino Intl-Labuan Bajo Labuan Bajo Mutiara

14h 00m2 stops Ho Chi Minh City Denpasar Bali Ngurah Rai

7:00 pm - 5:15 amLabuan Bajo Labuan Bajo Mutiara-Manila Manila Ninoy Aquino Intl

10h 15m1 stop Denpasar Bali Ngurah Rai

₱29,533Multiple Airlines

2 days ago

Mon, Nov 16 - Mon, Nov 23

11:05 pm - 2:25 pmManila Manila Ninoy Aquino Intl-Labuan Bajo Labuan Bajo Mutiara

15h 20m1 stop Kuala Lumpur Intl

8:45 am - 5:30 amLabuan Bajo Labuan Bajo Mutiara-Manila Manila Ninoy Aquino Intl

20h 45m2 stops Denpasar Bali Ngurah Rai Singapore Changi

₱30,477Multiple Airlines

1 day ago

Mon, Nov 2 - Thu, Nov 5

7:30 pm - 6:00 pmManila Manila Ninoy Aquino Intl-Labuan Bajo Labuan Bajo Mutiara

22h 30m2 stops Singapore Changi Denpasar Bali Ngurah Rai

9:50 am - 12:15 pmLabuan Bajo Labuan Bajo Mutiara-Manila Manila Ninoy Aquino Intl

26h 25m2 stops Denpasar Bali Ngurah Rai Kuala Lumpur Intl

₱30,855Multiple Airlines

3+ days ago

Mon, Nov 30 - Mon, Dec 7

7:30 pm - 6:00 pmManila Manila Ninoy Aquino Intl-Labuan Bajo Labuan Bajo Mutiara

22h 30m2 stops Singapore Changi Denpasar Bali Ngurah Rai

9:50 am - 12:15 pmLabuan Bajo Labuan Bajo Mutiara-Manila Manila Ninoy Aquino Intl

26h 25m2 stops Denpasar Bali Ngurah Rai Kuala Lumpur Intl

₱31,107Multiple Airlines

3+ days ago

Mon, Nov 2 - Thu, Nov 5

7:55 pm - 8:20 amManila Manila Ninoy Aquino Intl-Labuan Bajo Labuan Bajo Mutiara

12h 25m1 stop Denpasar Bali Ngurah Rai

5:05 pm - 5:30 amLabuan Bajo Labuan Bajo Mutiara-Manila Manila Ninoy Aquino Intl

12h 25m2 stops Jakarta Soekarno-Hatta Intl Singapore Changi

₱32,933Multiple Airlines

3+ days ago

All round-trip flight deals to Labuan Bajo

Mon, Nov 2 - Thu, Nov 5

7:55 pm - 8:20 amManila Manila Ninoy Aquino Intl-Labuan Bajo Labuan Bajo Mutiara

12h 25m1 stop Denpasar Bali Ngurah Rai

8:45 am - 5:15 amLabuan Bajo Labuan Bajo Mutiara-Manila Manila Ninoy Aquino Intl

20h 30m1 stop Denpasar Bali Ngurah Rai

₱26,636Multiple Airlines

3+ days ago

Sun, Nov 29 - Mon, Dec 7

3:45 am - 1:00 pmManila Manila Ninoy Aquino Intl-Labuan Bajo Labuan Bajo Mutiara

9h 15m1 stop Denpasar Bali Ngurah Rai

9:50 am - 5:20 amLabuan Bajo Labuan Bajo Mutiara-Manila Manila Ninoy Aquino Intl

19h 30m1 stop Denpasar Bali Ngurah Rai

₱26,699Multiple Airlines

3+ days ago

Mon, Nov 9 - Fri, Nov 13

11:05 pm - 2:25 pmManila Manila Ninoy Aquino Intl-Labuan Bajo Labuan Bajo Mutiara

15h 20m1 stop Kuala Lumpur Intl

8:45 am - 5:15 amLabuan Bajo Labuan Bajo Mutiara-Manila Manila Ninoy Aquino Intl

20h 30m1 stop Denpasar Bali Ngurah Rai

₱27,203Multiple Airlines

2 days ago

Mon, Nov 16 - Mon, Nov 23

11:05 pm - 2:25 pmManila Manila Ninoy Aquino Intl-Labuan Bajo Labuan Bajo Mutiara

15h 20m1 stop Kuala Lumpur Intl

5:05 pm - 6:45 amLabuan Bajo Labuan Bajo Mutiara-Manila Manila Ninoy Aquino Intl

13h 40m1 stop Jakarta Soekarno-Hatta Intl

₱27,518Multiple Airlines

1 day ago

Sun, Nov 29 - Mon, Dec 7

3:45 am - 1:00 pmManila Manila Ninoy Aquino Intl-Labuan Bajo Labuan Bajo Mutiara

9h 15m1 stop Denpasar Bali Ngurah Rai

8:45 am - 10:25 pmLabuan Bajo Labuan Bajo Mutiara-Manila Manila Ninoy Aquino Intl

13h 40m2 stops Denpasar Bali Ngurah Rai Kuala Lumpur Intl

₱28,399Multiple Airlines

3+ days ago

Sun, Nov 8 - Fri, Nov 13

4:00 am - 6:00 pmManila Manila Ninoy Aquino Intl-Labuan Bajo Labuan Bajo Mutiara

14h 00m2 stops Ho Chi Minh City Denpasar Bali Ngurah Rai

7:00 pm - 5:15 amLabuan Bajo Labuan Bajo Mutiara-Manila Manila Ninoy Aquino Intl

10h 15m1 stop Denpasar Bali Ngurah Rai

₱29,533Multiple Airlines

2 days ago

Mon, Nov 16 - Mon, Nov 23

11:05 pm - 2:25 pmManila Manila Ninoy Aquino Intl-Labuan Bajo Labuan Bajo Mutiara

15h 20m1 stop Kuala Lumpur Intl

8:45 am - 5:30 amLabuan Bajo Labuan Bajo Mutiara-Manila Manila Ninoy Aquino Intl

20h 45m2 stops Denpasar Bali Ngurah Rai Singapore Changi

₱30,477Multiple Airlines

1 day ago

Mon, Nov 2 - Thu, Nov 5

7:30 pm - 6:00 pmManila Manila Ninoy Aquino Intl-Labuan Bajo Labuan Bajo Mutiara

22h 30m2 stops Singapore Changi Denpasar Bali Ngurah Rai

9:50 am - 12:15 pmLabuan Bajo Labuan Bajo Mutiara-Manila Manila Ninoy Aquino Intl

26h 25m2 stops Denpasar Bali Ngurah Rai Kuala Lumpur Intl

₱30,855Multiple Airlines

3+ days ago

Mon, Nov 30 - Mon, Dec 7

7:30 pm - 6:00 pmManila Manila Ninoy Aquino Intl-Labuan Bajo Labuan Bajo Mutiara

22h 30m2 stops Singapore Changi Denpasar Bali Ngurah Rai

9:50 am - 12:15 pmLabuan Bajo Labuan Bajo Mutiara-Manila Manila Ninoy Aquino Intl

26h 25m2 stops Denpasar Bali Ngurah Rai Kuala Lumpur Intl

₱31,107Multiple Airlines

3+ days ago

Mon, Nov 2 - Thu, Nov 5

7:55 pm - 8:20 amManila Manila Ninoy Aquino Intl-Labuan Bajo Labuan Bajo Mutiara

12h 25m1 stop Denpasar Bali Ngurah Rai

5:05 pm - 5:30 amLabuan Bajo Labuan Bajo Mutiara-Manila Manila Ninoy Aquino Intl

12h 25m2 stops Jakarta Soekarno-Hatta Intl Singapore Changi

₱32,933Multiple Airlines

3+ days ago

Booking Insights

Price, demand and travel trends for flights to Labuan Bajo

Use KAYAK data on prices, travel dates, airlines and seasonal trends to compare options and book flights with more confidence.

Prices

Airlines

What is the cheapest flight to Labuan Bajo?: Manila to Labuan Bajo is the cheapest route at ₱26,636 round-trip, found in the past 5 days on KAYAK. KAYAK data shows this is also the most popular route.
How much is a flight to Labuan Bajo? Average and cheapest price for all round-trip flights to Labuan Bajo from each origin found by users searching on KAYAK in the last 12 months.: On average, a round-trip flight from the Philippines to Labuan Bajo costs ₱40,125, based on KAYAK data over the past 12 months. Round-trip fares from Manila average ₱47,212.
What is the cheapest time of day to fly to Labuan Bajo? Average price for all round-trip flights depending on time of departure, seen by users on KAYAK in the last 12 months.: Afternoon flights to Labuan Bajo are the cheapest at ₱22,417 round-trip on average. Morning flights are the most expensive at ₱47,227.

Find deals

Cheapest flight	₱10,957

One-way flight from Manila to Labuan Bajo

When to book flights to Labuan Bajo

Are your dates flexible? Find out the best times to travel to Labuan Bajo based on our flight data from the last year. Discover the cheapest month and even day to fly.

Estimated round-trip price

KAYAK looks at all historical flight data for each date to provide a predicted price for one-way trips or round-trips with a duration up to 40 days. The information is for flights to Labuan Bajo based on your location. While we try to provide actual minimum prices for each date, some prices are predictions and actual prices may differ.

How do I know if a flight to Labuan Bajo is a good deal?
A good deal on a flight to Labuan Bajo is around ₱22,430 round-trip. This fare is in the lowest 25% of round-trip prices searched on KAYAK, averaged across the cities most often searched as origins by KAYAK users.
Which airlines should I consider for flights to Labuan Bajo?
Scoot is the most popular airline with KAYAK users flying to Labuan Bajo and has the best on-time record at the destination's main airport.

For flights to Labuan Bajo, a good round-trip fare is around ₱22,430. If you find a fare below that, you're getting a strong deal.
Before you book:

• Check the route's typical price range so you can spot a deal.
• Confirm baggage fees and seat selection costs on budget carriers.
• Verify whether you need any travel documents beyond ID.
• Pick a departure airport, since your nearest may not be the cheapest origin.
Shift your departure to noon to save up to ₱24,810 per round-trip. Noon flights to Labuan Bajo average ₱22,417 compared to ₱47,227 for morning flights.

More options for your flight to Labuan Bajo

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₱10,957 Find Cheap Flights to Labuan Bajo - Compare and Save

Everything you should know

Cheap Flights to Labuan Bajo

Recent round-trip flight deals to Labuan Bajo

Recent one-way flight deals to Labuan Bajo

All round-trip flight deals to Labuan Bajo

Price, demand and travel trends for flights to Labuan Bajo

What is the cheapest flight to Labuan Bajo?

How much is a flight to Labuan Bajo?

What is the cheapest time of day to fly to Labuan Bajo?

What are the most popular airlines flying to Labuan Bajo?

Key details for flights to Labuan Bajo

Cheapest flight

When to book flights to Labuan Bajo

Your questions about flights to Labuan Bajo, answered

Your guide to booking Labuan Bajo flights

More options for your flight to Labuan Bajo

Complete your trip to Labuan Bajo with a hotel stay or car rental

Information on the airport you'll fly into in Labuan Bajo

Cabin class types available on flights to Labuan Bajo

Flights from local origins to Labuan Bajo

Flights to other popular destinations