₱6,727 Find Cheap Flights from Manila to Japan - Compare and Save

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Best Japan Flight Deals from Manila

Cheapest round-trip prices found by our users on KAYAK in the last 5 days
Tokyo
Tokyo1 stop₱17,225
Osaka
Osakadirect₱17,980
Sapporo
Sapporo1 stop₱22,254
Fukuoka
Fukuokadirect₱17,980
Nagasaki
Nagasaki1 stop₱27,095
Sendai
Sendai1 stop₱26,969
Hiroshima
Hiroshima1 stop₱26,844
Hakodate
Hakodate1 stop₱24,518
Aomori
Aomori1 stop₱40,234
Tokyo
Tokyo1 stop₱17,225
Osaka
Osakadirect₱17,980
Sapporo
Sapporo1 stop₱22,254
Fukuoka
Fukuokadirect₱17,980
Nagasaki
Nagasaki1 stop₱27,095
Sendai
Sendai1 stop₱26,969
Hiroshima
Hiroshima1 stop₱26,844
Hakodate
Hakodate1 stop₱24,518
Aomori
Aomori1 stop₱40,234
Booking Insights

KAYAK's insights & trends for Manila to Japan flights

Get data-powered insights and trends into flights from Manila to Japan to help you find the cheapest flights, the best time to fly and much more.

What is the cheapest Manila to Japan flight route?

The cheapest ticket to Japan from Manila found in the last 5 days was to Nagoya, at ₱11,890 round-trip. The most popular route is from Manila (MNL) to Tokyo Narita Airport (NRT), and the cheapest round-trip airline ticket found on this route in the last 5 days was ₱14,099.

What is the cheapest time of day to fly to Japan?

The cheapest time of day to fly to Japan is generally at night, when round-trip flights cost ₱17,035 on average. Morning departures are around 11% cheaper than evening flights, on average. The most expensive time of day to fly to Japan is generally in the evening, which is peak travel time and where the average cost of a ticket is ₱21,563.

Can I save money by flying with a layover from Manila to Japan?

No, with an average price for the route of ₱23,252, prices are generally cheapest when you fly direct.

What is the cheapest month to fly from Manila to Japan?

The cheapest month for flights from Manila to Japan is February, when tickets cost ₱16,596 (return) on average. On the other hand, the most expensive months are December and October, when the average cost of round-trip tickets is ₱23,512 and ₱20,117 respectively.

What’s the cheapest day of the week to fly from Manila to Japan?

If you are looking for a flight deal from Manila to Japan, look for departures on Mondays and avoid leaving on a Tuesday, as it's usually the priciest day. When flying back from Japan, Thursday is the cheapest day to fly and Tuesday is the most expensive.

How far in advance should I book a flight from Manila to Japan?

To get a below average price on the flight from Manila to Japan, you should book around 10 weeks before departure, which saves you about 36% compared to booking last minute. For the absolute cheapest price, our data suggests you should book 17 weeks before departure.

Good to know

Low season

August

Cheapest flight

₱6,727
Best time to beat the crowds but there is an average 1% increase in price.
Most popular time to fly (21% more expensive on average)
Flight from Manila to Nagoya Chubu Centrair Intl

Flights from Manila to Japan: the best tips from KAYAK users

Insights shared by verified travelers who flew the route from Manila to Japan 
Verified travelerFlew with ANA-Aug 2026
Always have your passport and boarding pass ready all the way to your seat. Use the restroom before you board.
Verified travelerFlew with ANA-Mar 2026
Make sure you weigh your carry-on and personal items. It was our first time having these weighed . On our previous flights with other airlines, they didn't weigh the carry-on and personal items so we were really confused when they instructed us to weigh it and then flustered when we had to open our check-in luggage to put some items from our personal items to meet the weight requirements.
Verified travelerFlew with Japan Airlines-Mar 2025
Be sure which terminal you are arriving and departing in Manila.
HFlew with Cebu Pacific-Apr 2025
Japan immigration and customs log online for faster clearance
BessieFlew with ANA-Sep 2024
ANA and JAL are always better. I try to take the first flight in the middle of the week.
KevinFlew with Cebu Pacific-Sep 2024
Bring charging cord as the have ports on the plane. You have to buy water, so get it in the airport, as 3 bottles is the same price as 1 warm bottle on the plane.
Verified travelerFlew with ANA-Feb 2024
Arriving at Terminal 3 at JFK was better than other terminals at JFK. The USA citizen immigration line was fast, the luggage arrived quickly and the spot to get uber ride was so organized .

FAQs - booking Japan flights

  • How does KAYAK find such low prices on flights from Manila to Japan?

    KAYAK is a travel search engine. That means we look across the web to find the best prices we can find for our users. With over 2 billion flight queries processed yearly, we are able to display a variety of prices and options on flights from Manila to Japan.

  • How does KAYAK's flight Price Forecast tool help me choose the right time to buy my flight ticket from Manila to Japan?

    KAYAK’s flight Price Forecast tool uses historical data to determine whether the price for a flight from Manila to Japan is likely to change within 7 days, so travelers know whether to wait or book now.

  • What is the Hacker Fare option on flights from Manila to Japan?

    Hacker Fares allow you to combine one-way tickets in order to save you money over a traditional round-trip ticket. You could then fly from Manila to Japan with an airline and back with another airline.

  • What is KAYAK's "flexible dates" feature and why should I care when looking for a flight from Manila to Japan?

    Sometimes travel dates aren't set in stone. If your preferred travel dates have some wiggle room, flexible dates will show you all the options when flying from Manila to Japan up to 3 days before/after your preferred dates. You can then pick the flights that suit you best.

Top tips for finding cheap flights to Japan

  • Looking for a cheap flight? 25% of our users found tickets from Manila to the following destinations at these prices or less: Osaka ₱10,285 one-way - ₱18,600 round-trip; Tokyo ₱9,815 one-way - ₱17,019 round-trip

Reviews of the top 5 airlines flying from Manila to Japan

 
Need help choosing which airline to fly with from Manila to Japan? KAYAK airline reviews give an overall score for each airline based on loads of factors, including comfort, boarding, in-flight entertainment and more, to make your decision easier. See airline scores according to verified KAYAK customer reviews.
7.6
Cathay PacificOverall score based on 1522 reviews
7.3Food
8.1Crew
7.9Boarding
7.6Comfort
7.8Entertainment
Airline reviews

Although I am a lifetime Gold Premier member on another airline association, I was placed in a inside passenger seat on both legs of my journey from SFO to HKG and onward to NRT. However, i was lucky enough to have befriended two other passengers (who were related) in my row (row 62) and therefore was kept entertained with conversation for a large portion of the overnight flight from SFO to HKG. Normally, on a Star Alliance carrier, I typically can have the seat of my choice (aisle seat) and also a Premier seat (wider and longer legroom). I was a bit disappointed that no recognition of my Gold Premier status was acknowledged by Cathay Pacific on either of my flights on Sept 26-27. The food was actually very tasty unlike the typical economy class menu. Also I appreciated that the dinner drinks were served first (prior) to the main meal on the HKG to NRT portion of my flights but drinks were served AFTER the meal had been distributed (less appealing for thirsty passengers). I was happily that there appeared to have ample cabin space for most everyone's bags ---although I did have to pay more than $400 in extra baggage fees as I had brought 4 bags with me Overall, I was impressed by the diligence and professionalism of the flight crew.

10.0 ExcellentDavid L., Sep 2026
Read more Cathay Pacific reviews

Although I am a lifetime Gold Premier member on another airline association, I was placed in a inside passenger seat on both legs of my journey from SFO to HKG and onward to NRT. However, i was lucky enough to have befriended two other passengers (who were related) in my row (row 62) and therefore was kept entertained with conversation for a large portion of the overnight flight from SFO to HKG. Normally, on a Star Alliance carrier, I typically can have the seat of my choice (aisle seat) and also a Premier seat (wider and longer legroom). I was a bit disappointed that no recognition of my Gold Premier status was acknowledged by Cathay Pacific on either of my flights on Sept 26-27. The food was actually very tasty unlike the typical economy class menu. Also I appreciated that the dinner drinks were served first (prior) to the main meal on the HKG to NRT portion of my flights but drinks were served AFTER the meal had been distributed (less appealing for thirsty passengers). I was happily that there appeared to have ample cabin space for most everyone's bags ---although I did have to pay more than $400 in extra baggage fees as I had brought 4 bags with me Overall, I was impressed by the diligence and professionalism of the flight crew.

More meal choice. There was only pork, beef and shrimp. I could not eat any of it and they had no alternatives

The only notable problem was bathroom facilities. Only one toilet for far too many people, and dirty nearly all the time. Both otherwise, Cathay Pacific is great. Wonderful staff everywhere.

I didn't see any flight attendants offer coffee or green tea. There was regular drink service but after a short meal was served didn't notice that happening.

Great entertainment system, the seat is a bit old style needs refurbishment

Boarding at the airport was not well managed. Otherwise, had a good flight sitting in the first row (which I paid for). Crew was pretty friendly, and flight was smooth.

Short staffs, I ask stewardess to bring me cognac twice during dinner but they didn't bring it!

Mediocre. Nothing special. Bad airline food Never received the food I requested Slow response from ground staff concerning my wheelchair. I was left at a holding area and had to walk the distance to the gate. In Hong Kong

My biggest complaint is the comfort and no good movies to choose from. My headphones didn't work either. 😔

Everything went smooth. All flights were on time No changing gates, . No changing flights . It was like a completely different airlines tha n the last time I used Cathay Pacific . The last flight, 2 months ago, I had before this one was from Philippines also . I got changed in Manila and was told it only added 2 hours onto my flight . My 20 hour return trip ended up being 30 hours return with a 10.0 hour layover in New York with no seats anywhere . Everyone was sleeping or sitting on the floor . Unlike the hotel I was given in Manila to wait for this flight home . I never thought I would use Cathay Pacific again . But I did and this time you were great! I should have complained about the flight and layover from Hell a couple months ago. Consider that I am complaining about that august/23 flight now . Thank you got the great flying experience on my way home from philippines .

Between being the only jetstar flight delayed to changing gates at the last moment and starting boarding late, jetstar dropped the ball on this one. we had to run for last train. Never again

The seats are very uncomfortable just was not a pleasant experience

my flight was cancelled an hour before departure and i have not received a refund yet.

A child behind me was kicking my seat and the cabin attendant noticed and kindly asked me if I’d like to switch to a different available seat. Really nice.

The flight crew was very nice. Had a bit of a hiccup on my end when I checked in flying from Tokyo to Sapporo but the staff was very helpful. Definitely enjoyed both flights.

Crew were decent. For 14+ hour flight, the leg room was cramping, the food is terrible, no flavor, no taste. I wouldn't fly this airline again just dreading about their bland, flavorless food offerings. It was cheap flight, arrived early in jfk but waited > hour to get to the gate. Not sure if that was flight crew's fault or airport fault. But it made me not to fly this airline again

Everything went excellent! I worried a little about my luggage, cause i had a long stop at Qatar Airport (DOHA) on my way back, but everything went perfect!!! Great Airline, great pilots, the crew is amazing!!!! Respect for the people doing amazing things who nobody sees!!! I am from the Netherlands... Our stupid airport could learn a lot of Philippines Airlines.

They asked me to go down to economy when i booked for comfort class

amazing service for a 4hr flight, great selection of movies and music, blanket options, good toilets

The staff seemed nice. The plane is small and being tall you can experience discomfort

Flight stewards were sometimes short when passengers made requests at the same time. The requests were simple but a smile & a remark of "I'll get to you soon" instead of a curt & passing "Wait a minute." Flying is not cheap & good manners should be a given when taking care of people cramped in seats for longer than ten hours. The food tasted great but doesn't look appetizing. The mid-meal break food or merienda were great in the last two flights I was on.

It was amazing with great service. But the seating could have been better if there was ample arm rest areas

Service was good but food needs maybe it’s just me Cause I am a foodservice supervisor more menu Sampling to get better quality when packed to be reheated . Vegetables are already dark and over cooked and breaded entrees are not the best choice I guess . All airlines meal service doesn’t appeal To me.Cause this trip I’ve used 4 different airlines and nothing good in all of them food wise. Thanks

They were two hours late!! Threw everything else planned off.

Uncomfortable seats for international flights. No usb charging yet they want you to use your device for entertainment. Very poor.

Cebu Pacific is just ok. Not really a budget airline as tickets can be pricey especially the add-ons. Releasing of checked-in baggage also took a long time to be available for pick-up. I also have a pending issue with Go Rewards where the my membership ID was automatically removed from the booking so the points were not awarded, and it has not been fixed for months already.

Terrible. Not to be trusted. I missed a flight from Manila due to 3+ hours in traffic to the airport. Customer service was rude and unhelpful. I booked a new flight. The cost was steep. And on my credit card online account, Cebu Pacific charged me for two tickets, yet I'm traveling alone, one person. They are impossible to reach and pathetic customer service. My credit card company is looking into it. NEVER, NEVER fly Cebu Pacific. They will rip you off. They don't care, they don't have to. Fly another airline in the Philippines.

Most passengers going to Dumaguete early are tourists who are some booked thier ferry online. Mine was wasted because of delays cause by waiting on runway before taking off and too long before they let us go down...I could still make it in time if they let us go down early. We are just there waiting to go down the plane for 10-15mins.

We were allowed to board early, seats were spacious and we arrived early.

I had excellent experienced flying with Cebu Pacific on my domestic flight. However, no food and beverage serve might be due to short travel time of 40 minutes.

flight cancelled.. booked through orbitz, yet orbitz won't handle refunds.. never use them again..

It arrived 18 minutes early. Attendant are good. For baording , they should improve especially carrying thru bus.

Super delayed. Delayed to get the bus, delayed to get off the bus, delayed to take off.

exceptionally good with the particular flight because no delay. hope that happens for every flight

Boarding had us in a tunnel with no AC for 15 minutes. Not planned well. And you have to pay for water, get at airport

Didn’t like anything and nothing could be better because they delayed my same flights 4 times!

It didn't crash. But it was a bit delayed!

This flight was excellent in all ways if they could repeat it consistently they would grow immediately

Philippines AirAsia is never on-time flight, delayed 3 hours. Everything else was fine though.

Service it was good Lower airfare and discount for loyal customer

The flight was delayed by an hour . Traveling with 75 year old father was difficult and then when he asked for water he was asked to purchase :-) . Overall just an ok experience.

Premium seats should have legroom this one didn't have it. I had 2 free checked bag but I got charged for while it shows on my reservation

Terrible airline! This airline just ruined our family vacation due to a 12 hours delay as a result of their operational issues.

Over 6 hours delayed.. using philippine air fleet planes are beat up dirty and uncomfortable. Have been flying air asia for over 4 years from Manila to Tokyo and kansai as well as several local flights from Manila to Bacolod and Cebu.. 3 planes were down for maintenance and caused havoc.. need to invest in new fleet or seriously clean and upgrade the existing fleet. Will not be flying anymore until fixed. Several options out there now to choose from as air asia prices have skyrocketed.. no point in using them anymore . Severally upset passenger here. They can’t even manage the queuing of Zones for boarding as it’s a crab fest free for all now. No discipline and let the passengers in line to board just run into any lane possible.. and priority luggage?? Forget it I’ve paid for it for the last 6 flights and never got it first.. air asia has turned into a expensive joke.. use Cebu pacific or zip air now..

We had three flight delays before eventually taking off 3 hours late. Inflight service was very limited, but it was a relatively short flight. Luggage was delivered promptly.

More options for your flight from Manila to Japan

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