₱3,557 Find Cheap Flights from Manila to Japan

This is the cheapest one-way flight price found by a KAYAK user in the last 72 hours by searching for a flight from Manila to Japan departing on 3/24. Fares are subject to change and may not be available on all flights or dates of travel. Click the price to replicate the search for this deal.
1 adult
1 adult, Economy, 0 bags

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Flight Deals

Best Japan Flight Deals from Manila

Cheapest round-trip prices found by our users on KAYAK in the last 72 hours
Tokyo
Tokyodirect₱10,078
Osaka
Osakadirect₱11,204
Nagoya
Nagoya1 stop₱12,982
Fukuoka
Fukuokadirect₱8,121
Hiroshima
Hiroshima2 stops₱23,120
Hakodate
Hakodate2 stops₱25,846
Matsuyama
Matsuyama1 stop₱20,926
Iwakuni
Iwakuni1 stop₱27,743
Niigata
Niigata3 stops₱28,099
Kagoshima
Kagoshima2 stops₱26,439
Tokyo
Tokyodirect₱10,078
Osaka
Osakadirect₱11,204
Nagoya
Nagoya1 stop₱12,982
Fukuoka
Fukuokadirect₱8,121
Hiroshima
Hiroshima2 stops₱23,120
Hakodate
Hakodate2 stops₱25,846
Matsuyama
Matsuyama1 stop₱20,926
Iwakuni
Iwakuni1 stop₱27,743
Niigata
Niigata3 stops₱28,099
Kagoshima
Kagoshima2 stops₱26,439

Cheap Flights from Manila to Japan

 
Here are some of the best deals found on KAYAK recently from the most popular airlines for return flights from Manila to Japan that are departing in the next months. While these flights were available on KAYAK in the last 72 hours, prices and availability are subject to change and deals may expire.
Discover the best prices for you by selecting your travel dates on KAYAK.

Recent round-trip flight deals from Manila to Japan

Tue, Apr 21 - Mon, Apr 27
Cebu Pacific Logo
2:00 pm - 7:00 pm
MNL
-
FUK
4h 00mnonstop
Cebu Pacific Logo
8:00 pm - 11:10 pm
FUK
-
MNL
4h 10mnonstop
₱8,121Cebu Pacific
Sun, Jun 7 - Sat, Jun 13
Multiple Airlines Logo
4:35 am - 10:10 am
MNL
-
NRT
4h 35mnonstop
Multiple Airlines Logo
7:25 pm - 11:35 pm
NRT
-
MNL
5h 10mnonstop
₱10,078Multiple Airlines
Mon, Jun 8 - Mon, Jun 15
Cebu Pacific Logo
12:30 pm - 6:10 pm
MNL
-
NRT
4h 40mnonstop
Cebu Pacific Logo
12:50 pm - 5:05 pm
NRT
-
MNL
5h 15mnonstop
₱10,137Cebu Pacific
Thu, Jun 4 - Sun, Jun 7
Philippines AirAsia Logo
4:35 am - 10:10 am
MNL
-
NRT
4h 35mnonstop
Philippines AirAsia Logo
11:10 am - 2:50 pm
NRT
-
MNL
4h 40mnonstop
₱10,552Philippines AirAsia
Sun, May 31 - Thu, Jun 4
Jetstar Japan Logo
2:50 am - 8:05 am
MNL
-
KIX
4h 15mnonstop
Jetstar Japan Logo
10:25 pm - 1:50 am
KIX
-
MNL
4h 25mnonstop
₱11,204Jetstar Japan
Sun, Mar 15 - Sun, Mar 22
Jetstar Japan Logo
2:40 am - 7:25 am
MNL
-
KIX
3h 45mnonstop
Jetstar Japan Logo
10:00 pm - 1:40 am
KIX
-
MNL
4h 40mnonstop
₱11,323Jetstar Japan
Tue, Feb 3 - Fri, Feb 6
Cathay Pacific Logo
8:00 am - 9:15 pm
MNL
-
HND
12h 15m
1 stop
Cathay Pacific Logo
12:25 am - 9:40 am
HND
-
MNL
10h 15m
1 stop
₱12,568Cathay Pacific
Thu, Jun 4 - Mon, Jun 8
Cathay Pacific Logo
10:45 am - 9:35 pm
MNL
-
HND
9h 50m
1 stop
Cathay Pacific Logo
10:05 am - 7:10 pm
HND
-
MNL
10h 05m
1 stop
₱12,805Cathay Pacific
Sun, Jul 12 - Sat, Jul 18
ANA Logo
9:10 am - 6:55 pm
MNL
-
ITM
8h 45m
1 stop
ANA Logo
7:05 am - 1:30 pm
ITM
-
MNL
7h 25m
1 stop
₱26,439ANA
Mon, Apr 27 - Fri, May 1
ANA Logo
9:10 am - 6:55 pm
MNL
-
ITM
8h 45m
1 stop
ANA Logo
2:05 pm - 9:15 pm
ITM
-
MNL
8h 10m
1 stop
₱26,617ANA
Booking Insights

KAYAK's insights & trends for Manila to Japan flights

Get data-powered insights and trends into flights from Manila to Japan to help you find the cheapest flights, the best time to fly and much more.

What is the cheapest Manila to Japan flight route?

Data is based on round-trip flight searches on KAYAK over the past month.

The cheapest ticket to Japan from Manila found in the last 72 hours was to Fukuoka, at ₱8,416 round-trip. The most popular route is from Manila (MNL) to Tokyo Narita Airport (NRT), and the cheapest round-trip airline ticket found on this route in the last 72 hours was ₱8,816.

Can I save money by flying with a layover from Manila to Japan?

The average round-trip price for all non-stop flights, flights with one layover, and flights with two layovers for the route found by users searching on KAYAK in the last 2 weeks.

No, with an average price for the route of ₱17,809, prices are generally cheapest when you fly direct.

What is the cheapest month to fly from Manila to Japan?

To calculate monthly average prices, KAYAK takes all prices for each month over the last year for round-trip flights from Manila to Japan, removes the top 0.1% to account for outliers, and then takes the median of all values for each month.

The cheapest month for flights from Manila to Japan is September, when tickets cost ₱10,137 (return) on average. On the other hand, the most expensive months are December and April, when the average cost of round-trip tickets is ₱19,148 and ₱16,480 respectively.

What’s the cheapest day of the week to fly from Manila to Japan?

The average price of all round-trip flights from Manila to Japan clicked on KAYAK for each day over the last 12 months.

If you are looking for a flight deal from Manila to Japan, look for departures on Sundays and avoid leaving on a Tuesday, as it's usually the priciest day. When flying back from Japan, Monday is the cheapest day to fly and Saturday is the most expensive.

How far in advance should I book a flight from Manila to Japan?

To calculate weekly average prices, KAYAK takes all prices for each week before departure over the last year for round-trip flights from Manila to Japan, removes the top 0.1% to account for outliers, and then takes the average of all the values for each week.

To get a below average price on the flight from Manila to Japan, you should book around 9 weeks before departure, which saves you about 35% compared to booking last minute. For the absolute cheapest price, our data suggests you should book 17 weeks before departure.

Good to know

Low seasonAugust
Cheapest flight₱5,276
Best time to beat the crowds (3% less expensive on average)
Most popular time to fly (30% more expensive on average)
Flight from Manila to Osaka Kansai Intl

Flights from Manila to Japan: the best tips from KAYAK users

Insights shared by verified travelers who flew the route from Manila to Japan 
Verified travelerFlew with Japan Airlines
MNL
-
NRT
Mar 2025
Be sure which terminal you are arriving and departing in Manila.
HFlew with Cebu Pacific
MNL
-
CTS
Apr 2025
Japan immigration and customs log online for faster clearance
BessieFlew with ANA
MNL
-
NRT
Sep 2024
ANA and JAL are always better. I try to take the first flight in the middle of the week.
KevinFlew with Cebu Pacific
MNL
-
NRT
Sep 2024
Bring charging cord as the have ports on the plane. You have to buy water, so get it in the airport, as 3 bottles is the same price as 1 warm bottle on the plane.
Verified travelerFlew with ANA
MNL
-
HND
Feb 2024
Arriving at Terminal 3 at JFK was better than other terminals at JFK. The USA citizen immigration line was fast, the luggage arrived quickly and the spot to get uber ride was so organized .

FAQs - booking Japan flights

  • How does KAYAK find such low prices on flights from Manila to Japan?

    KAYAK is a travel search engine. That means we look across the web to find the best prices we can find for our users. With over 2 billion flight queries processed yearly, we are able to display a variety of prices and options on flights from Manila to Japan.

  • How does KAYAK's flight Price Forecast tool help me choose the right time to buy my flight ticket from Manila to Japan?

    KAYAK’s flight Price Forecast tool uses historical data to determine whether the price for a flight from Manila to Japan is likely to change within 7 days, so travelers know whether to wait or book now.

  • What is the Hacker Fare option on flights from Manila to Japan?

    Hacker Fares allow you to combine one-way tickets in order to save you money over a traditional round-trip ticket. You could then fly from Manila to Japan with an airline and back with another airline.

  • What is KAYAK's "flexible dates" feature and why should I care when looking for a flight from Manila to Japan?

    Sometimes travel dates aren't set in stone. If your preferred travel dates have some wiggle room, flexible dates will show you all the options when flying from Manila to Japan up to 3 days before/after your preferred dates. You can then pick the flights that suit you best.

  • What is the cheapest time of day to fly to Japan?

    The cheapest time of day to fly to Japan is generally in the evening, when round-trip flights cost ₱10,193 on average. Morning departures are around 41% more expensive than evening flights, on average. The most expensive time of day to fly to Japan is generally in the afternoon, which is peak travel time and where the average cost of a ticket is ₱16,996.

Top tips for finding cheap flights to Japan

  • Looking for a cheap flight? 25% of our users found tickets from Manila to the following destinations at these prices or less: Osaka ₱6,408 one-way - ₱12,885 round-trip; Tokyo ₱6,839 one-way - ₱11,280 round-trip

Reviews of the top 5 airlines flying from Manila to Japan

 
Need help choosing which airline to fly with from Manila to Japan? KAYAK airline reviews give an overall score for each airline based on loads of factors, including comfort, boarding, in-flight entertainment and more, to make your decision easier. See airline scores according to verified KAYAK customer reviews.
7.6
Cathay PacificOverall score based on 1140 reviews
7.6Comfort
7.7Entertainment
7.9Boarding
7.3Food
8.1Crew
Airline reviews

Vegetarian options should be included with every meal. Even just simple steamed vegetables and whole grains would capture a wide audience.

6.0 GoodAnonymous, Jan 2026
HKG - JFK
Read more Cathay Pacific reviews

Vegetarian options should be included with every meal. Even just simple steamed vegetables and whole grains would capture a wide audience.

Flight from Hong Kong to LAX was late, the plane was grubby, overcrowded and hot. I recently flew Starlux and that was a MUCH better experience.

The bed was alright in business class. Food variety and quality were not up to the mark compared to the business class airfare.

Food , drink experience were great with Cathay. Crew service was excellent. Clean toilet and full snack bars always, pilot took of 26minutes later when boarding at Hong Kong with extra US customs check at gate 9 for US flight, but he managed to arrive only 2 minutes later from flight tracker. Smooth flight .

The flight was just ok, but the vendor made it exceptio ally bard to manage my own reservation and would not give me access. The blocked all of the one time pins to come to their email address which caused me.to go through them eceryrime to get seats see rhe reservation and even get wheelchair access for my sick 71 year old uncle. They only xommunicates via a bot which gave me incorrect info. I thought this was Kayak and not underprivileged. They ruined his trip, did not get him aisle seats and made it impossible to purchase extra leg room. It was a horrible experience. He was taken to hospital on arrival only to find he had blood clots and pnemonia while trying to navigate the airport. This vendor is very irresponsible and the airline could not access his info.

Flew from lax economy on cathay 777. Seat configuration 3-4-3. When the forward seat reclines it feels like someone is leaning forward and staring you. If you are slightly big tray tables will touch your abdomen even with seats upright. AVOID this above 777 configuration at all cost for a long flight. However their Airbus 350 3-3-3 configuration felt spacious and Seats wider.

Not much of anything could have been done better unless I had a first class ticket. I was literally 15 hours with an airline in the economy class. Very professional friendly and attentive crew. Good airline food, clean cabin, seating area and bathrooms. I've been 4 times back-and-forth with Cathay Pacific, and I would not choose another airline for this trip. Five out of five stars.

First time tying out business class with this airline, hat a disappointment, never returning. We didn’t get the meal as requested from Singapore to HKG flight. While meals served connecting flight, crew takes meal order based off passenger membership status by giving the. Priority selection of meals. It was a battle, plain disappointment, not worth the hype, price, class as categorized/ advertised

Issues: 1) the charging issue as described in my previous survey 2) when I requested diet coke during the breakfast time, it is not available. Why? I can't drink diet coke in the morning? 3) when I tried to transfer to this flight, its gate information was not available to me?

The lead business class attendant was excellent. Made a point of greeting you and knowing your name by the time you leave.

The seats are very uncomfortable just was not a pleasant experience

my flight was cancelled an hour before departure and i have not received a refund yet.

A child behind me was kicking my seat and the cabin attendant noticed and kindly asked me if I’d like to switch to a different available seat. Really nice.

The flight crew was very nice. Had a bit of a hiccup on my end when I checked in flying from Tokyo to Sapporo but the staff was very helpful. Definitely enjoyed both flights.

There was no social distancing on the plane. Lots of people sneezing, etc so the coronavirus measures they are taking are not adequate. Very uncomfortable flight. Also hard to get customer service support by phone in English.

My luggages were lost and the service attendant was extremely unprofessional. Despite presenting my luggage claim slips, the attendant stated she had “no record” of my bags and made no meaningful effort to assist. When I explained that the luggage contained our family’s complete scuba diving equipment, her response was dismissive, stating that she “didn’t care.” While lost luggage is frustrating on its own, the lack of professionalism and lack of empathy significantly worsened the situation.

Flight was good took off on time arrived early. Crew was awesome and did a great job. Very helpful and courteous. Bags arrived super fast with no hassles. Great flight!!!!!!

A shameful national carrier. Service has gone down from the highs of a decade before. You don’t feel the Filipino hospitality. It’s an aging fleet. Nil comfort, and I flew premium economy.

Excellent! All flight related was memorable ! My first experience with Mabuhay Lounge,,, not so good

Great. Always great service and their pilots know how to land planes properly

Food could of been better. Crew was pretty much average. It was raining a lot on arrival, had to take a bus to immigration building,

Flight was really good, considering the semi bad weather in MNL. Food was great. Crew kept offering throughout the flight. Wifi signal was intermittent though.

You have to pay $25 to get access to smoking lounge. One coffee and small bottle of water coupon provided. Max time 2 hrs for two entries total.

Everything was very good but seats are small for a big man!

Theairline, both at the terminal and during the entirety of the flight were kept at uncomfortably cold temps. Maybe between 55 and 60 f. Those who had traveled with the airline before donned puffer jackets, wool hats and pulled blankets from their carry-on bags. The seat back entertainment also failed on my trip, leaving me for 12 hrs. With nothing. Seats offered enough room (barely) for a 6'1" frame, but it was pretty tight But the worst offender was the uncomfortable temp..

Terrible. Not to be trusted. I missed a flight from Manila due to 3+ hours in traffic to the airport. Customer service was rude and unhelpful. I booked a new flight. The cost was steep. And on my credit card online account, Cebu Pacific charged me for two tickets, yet I'm traveling alone, one person. They are impossible to reach and pathetic customer service. My credit card company is looking into it. NEVER, NEVER fly Cebu Pacific. They will rip you off. They don't care, they don't have to. Fly another airline in the Philippines.

Most passengers going to Dumaguete early are tourists who are some booked thier ferry online. Mine was wasted because of delays cause by waiting on runway before taking off and too long before they let us go down...I could still make it in time if they let us go down early. We are just there waiting to go down the plane for 10-15mins.

We were allowed to board early, seats were spacious and we arrived early.

The seats were dirty. Food on tray table. Late on my first flight and almost an hour early on the return. My driver was unable to adjust and I had to pay for different ground transportation.

I had excellent experienced flying with Cebu Pacific on my domestic flight. However, no food and beverage serve might be due to short travel time of 40 minutes.

No entertainment and not expected. Cabin was very cold which brought the comfort score down

Your check in lines were terrible everything else was great!

flight cancelled.. booked through orbitz, yet orbitz won't handle refunds.. never use them again..

It arrived 18 minutes early. Attendant are good. For baording , they should improve especially carrying thru bus.

Super delayed. Delayed to get the bus, delayed to get off the bus, delayed to take off.

This flight was excellent in all ways if they could repeat it consistently they would grow immediately

Philippines AirAsia is never on-time flight, delayed 3 hours. Everything else was fine though.

Service it was good Lower airfare and discount for loyal customer

Not a good experience. They did not have the food I ordered in advance. The crew is not offer a second snack on a 5 hour flight. The WiFi was either not working or was very difficult to connect to.

The flight was delayed by an hour . Traveling with 75 year old father was difficult and then when he asked for water he was asked to purchase :-) . Overall just an ok experience.

Overall service is good, the only thing I would like airasia to improve is there seating. Their seat handles are broken as well as the back rest

Boarding with air asia is excellent via organized lines by zone except when there is only 1 gate agent and no scanner, only by tearing tickets??? Crazy

The flight was supposed to depart at 9:25. It departed at 9:00. Im glad we were early and did not miss it.

They wouldn't even allow us to bring water from the fountain on board the aircraft.

Premium seats should have legroom this one didn't have it. I had 2 free checked bag but I got charged for while it shows on my reservation

Everything you need to know for your flight from Manila to Japan

Information on your arrival and departure airports