₱3,678 Find Cheap Flights from Manila to Japan

This is the cheapest one-way flight price found by a KAYAK user in the last 72 hours by searching for a flight from Manila to Japan departing on 12/3. Fares are subject to change and may not be available on all flights or dates of travel. Click the price to replicate the search for this deal.
1 adult
1 adult, Economy, 0 bags

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Flight Deals

Best Japan Flight Deals from Manila

Cheapest round-trip prices found by our users on KAYAK in the last 72 hours
Tokyo
Tokyo1 stop₱9,341
Osaka
Osakadirect₱9,633
Nagoya
Nagoyadirect₱12,201
Fukuoka
Fukuokadirect₱8,699
Hiroshima
Hiroshima1 stop₱21,776
Sendai
Sendai2 stops₱22,651
Hakodate
Hakodate1 stop₱22,184
Matsuyama
Matsuyama1 stop₱20,958
Iwakuni
Iwakuni1 stop₱27,497
Yamagata
Yamagata1 stop₱27,672
Kagoshima
Kagoshima1 stop₱28,373
Ishigaki
Ishigaki1 stop₱23,177
Miyazaki
Miyazaki1 stop₱20,900
Tokyo
Tokyo1 stop₱9,341
Osaka
Osakadirect₱9,633
Nagoya
Nagoyadirect₱12,201
Fukuoka
Fukuokadirect₱8,699
Hiroshima
Hiroshima1 stop₱21,776
Sendai
Sendai2 stops₱22,651
Hakodate
Hakodate1 stop₱22,184
Matsuyama
Matsuyama1 stop₱20,958
Iwakuni
Iwakuni1 stop₱27,497
Yamagata
Yamagata1 stop₱27,672
Kagoshima
Kagoshima1 stop₱28,373
Ishigaki
Ishigaki1 stop₱23,177
Miyazaki
Miyazaki1 stop₱20,900

Cheap Flights from Manila to Japan

 
Here are some of the best deals found on KAYAK recently from the most popular airlines for return flights from Manila to Japan that are departing in the next months. While these flights were available on KAYAK in the last 72 hours, prices and availability are subject to change and deals may expire.
Discover the best prices for you by selecting your travel dates on KAYAK.

Recent round-trip flight deals from Manila to Japan

Fri, Jan 30 - Sun, Feb 1
Cebu Pacific Logo
2:20 pm - 7:00 pmMNL-FUK
3h 40mnonstop
Cebu Pacific Logo
8:00 pm - 11:10 pmFUK-MNL
4h 10mnonstop
₱8,699Cebu Pacific
Find Deal
Sat, Feb 28 - Sat, Mar 7
Cebu Pacific Logo
2:10 pm - 7:00 pmMNL-FUK
3h 50mnonstop
Cebu Pacific Logo
8:00 pm - 11:10 pmFUK-MNL
4h 10mnonstop
₱8,757Cebu Pacific
Find Deal
Wed, Mar 18 - Wed, Mar 25
Jetstar Japan Logo
2:40 am - 7:25 amMNL-KIX
3h 45mnonstop
Jetstar Japan Logo
10:00 pm - 1:40 amKIX-MNL
4h 40mnonstop
₱9,633Jetstar Japan
Find Deal
Wed, Dec 3 - Thu, Dec 11
Jetstar Japan Logo
2:40 am - 7:25 amMNL-KIX
3h 45mnonstop
Jetstar Japan Logo
10:00 pm - 1:40 amKIX-MNL
4h 40mnonstop
₱9,691Jetstar Japan
Find Deal
Fri, Nov 14 - Mon, Nov 17
ZIPAIR Logo
2:30 pm - 7:50 pmMNL-NRT
4h 20mnonstop
ZIPAIR Logo
8:55 am - 1:00 pmNRT-MNL
5h 05mnonstop
₱10,392ZIPAIR
Find Deal
Fri, Nov 14 - Mon, Nov 24
ZIPAIR Logo
2:30 pm - 7:50 pmMNL-NRT
4h 20mnonstop
ZIPAIR Logo
8:55 am - 1:00 pmNRT-MNL
5h 05mnonstop
₱10,742ZIPAIR
Find Deal
Wed, Nov 12 - Thu, Feb 12
Philippines AirAsia Logo
4:45 am - 10:25 amMNL-NRT
4h 40mnonstop
Philippines AirAsia Logo
11:25 am - 3:20 pmNRT-MNL
4h 55mnonstop
₱11,209Philippines AirAsia
Find Deal
Sun, Nov 16 - Wed, Nov 26
Philippines AirAsia Logo
4:45 am - 10:25 amMNL-NRT
4h 40mnonstop
Philippines AirAsia Logo
11:25 am - 3:20 pmNRT-MNL
4h 55mnonstop
₱11,851Philippines AirAsia
Find Deal
Wed, Jan 21 - Sat, Jan 24
Philippine Airlines Logo
7:00 pm - 12:20 amMNL-HND
4h 20mnonstop
Philippine Airlines Logo
1:45 am - 5:50 amHND-MNL
5h 05mnonstop
₱14,653Philippine Airlines
Find Deal
Tue, Apr 14 - Fri, Apr 17
Philippine Airlines Logo
9:45 am - 2:30 pmMNL-FUK
3h 45mnonstop
Philippine Airlines Logo
3:30 pm - 6:25 pmFUK-MNL
3h 55mnonstop
₱15,004Philippine Airlines
Find Deal
Booking Insights

KAYAK's insights & trends for Manila to Japan flights

Get data-powered insights and trends into flights from Manila to Japan to help you find the cheapest flights, the best time to fly and much more.

What is the cheapest Manila to Japan flight route?

Data is based on round-trip flight searches on KAYAK over the past month.

The cheapest ticket to Japan from Manila found in the last 72 hours was to Fukuoka, at ₱7,898 round-trip. The most popular route is from Manila (MNL) to Tokyo Narita Airport (NRT), and the cheapest round-trip airline ticket found on this route in the last 72 hours was ₱8,671.

Can I save money by flying with a layover from Manila to Japan?

The average round-trip price for all non-stop flights, flights with one layover, and flights with two layovers for the route found by users searching on KAYAK in the last 2 weeks.

No, with an average price for the route of ₱17,356, prices are generally cheapest when you fly direct.

What is the cheapest month to fly from Manila to Japan?

To calculate monthly average prices, KAYAK takes all prices for each month over the last year for round-trip flights from Manila to Japan, removes the top 0.1% to account for outliers, and then takes the median of all values for each month.

The cheapest month for flights from Manila to Japan is September, when tickets cost ₱10,275 (return) on average. On the other hand, the most expensive months are December and April, when the average cost of round-trip tickets is ₱20,375 and ₱16,346 respectively.

What’s the cheapest day of the week to fly from Manila to Japan?

The average price of all round-trip flights from Manila to Japan clicked on KAYAK for each day over the last 12 months.

If you are looking for a flight deal from Manila to Japan, look for departures on Sundays and avoid leaving on a Tuesday, as it's usually the priciest day. When flying back from Japan, Monday is the cheapest day to fly and Saturday is the most expensive.

How far in advance should I book a flight from Manila to Japan?

To calculate weekly average prices, KAYAK takes all prices for each week before departure over the last year for round-trip flights from Manila to Japan, removes the top 0.1% to account for outliers, and then takes the average of all the values for each week.

To get a below average price on the flight from Manila to Japan, you should book around 9 weeks before departure, which saves you about 33% compared to booking last minute. For the absolute cheapest price, our data suggests you should book 17 weeks before departure.

Good to know

Low seasonJuly
Cheapest flight₱3,678
Best time to beat the crowds (24% less expensive on average)
Most popular time to fly (32% more expensive on average)
Flight from Manila to Fukuoka

Flights from Manila to Japan: the best tips from KAYAK users

Insights shared by verified travelers who flew the route from Manila to Japan 
Verified travelerFlew with Japan AirlinesMNL-NRTMar 2025
Be sure which terminal you are arriving and departing in Manila.
HFlew with Cebu PacificMNL-CTSApr 2025
Japan immigration and customs log online for faster clearance
BessieFlew with ANAMNL-NRTSep 2024
ANA and JAL are always better. I try to take the first flight in the middle of the week.
KevinFlew with Cebu PacificMNL-NRTSep 2024
Bring charging cord as the have ports on the plane. You have to buy water, so get it in the airport, as 3 bottles is the same price as 1 warm bottle on the plane.
Verified travelerFlew with ANAMNL-HNDFeb 2024
Arriving at Terminal 3 at JFK was better than other terminals at JFK. The USA citizen immigration line was fast, the luggage arrived quickly and the spot to get uber ride was so organized .

FAQs - booking Japan flights

  • How does KAYAK find such low prices on flights from Manila to Japan?

    KAYAK is a travel search engine. That means we look across the web to find the best prices we can find for our users. With over 2 billion flight queries processed yearly, we are able to display a variety of prices and options on flights from Manila to Japan.

  • How does KAYAK's flight Price Forecast tool help me choose the right time to buy my flight ticket from Manila to Japan?

    KAYAK’s flight Price Forecast tool uses historical data to determine whether the price for a flight from Manila to Japan is likely to change within 7 days, so travelers know whether to wait or book now.

  • What is the Hacker Fare option on flights from Manila to Japan?

    Hacker Fares allow you to combine one-way tickets in order to save you money over a traditional round-trip ticket. You could then fly from Manila to Japan with an airline and back with another airline.

  • What is KAYAK's "flexible dates" feature and why should I care when looking for a flight from Manila to Japan?

    Sometimes travel dates aren't set in stone. If your preferred travel dates have some wiggle room, flexible dates will show you all the options when flying from Manila to Japan up to 3 days before/after your preferred dates. You can then pick the flights that suit you best.

  • What is the cheapest time of day to fly to Japan?

    The cheapest time of day to fly to Japan is generally in the evening, when round-trip flights cost ₱11,469 on average. Morning departures are around 24% more expensive than evening flights, on average. The most expensive time of day to fly to Japan is generally in the afternoon, which is peak travel time and where the average cost of a ticket is ₱15,307.

Top tips for finding cheap flights to Japan

  • Looking for a cheap flight? 25% of our users found tickets from Manila to the following destinations at these prices or less: Osaka ₱4,764 one-way - ₱11,706 round-trip; Tokyo ₱5,548 one-way - ₱10,424 round-trip

Reviews of the top 5 airlines flying from Manila to Japan

 
Need help choosing which airline to fly with from Manila to Japan? KAYAK airline reviews give an overall score for each airline based on loads of factors, including comfort, boarding, in-flight entertainment and more, to make your decision easier. See airline scores according to verified KAYAK customer reviews.
7.5
Jetstar JapanOverall score based on 57 reviews
6.7Food
7.3Comfort
8.0Crew
7.7Boarding
6.3Entertainment
Airline reviews

The seats are very uncomfortable just was not a pleasant experience

2.0 MediocreAnonymous, Aug 2023NRT - MNL
Read more Jetstar Japan reviews

The seats are very uncomfortable just was not a pleasant experience

my flight was cancelled an hour before departure and i have not received a refund yet.

A child behind me was kicking my seat and the cabin attendant noticed and kindly asked me if I’d like to switch to a different available seat. Really nice.

The flight crew was very nice. Had a bit of a hiccup on my end when I checked in flying from Tokyo to Sapporo but the staff was very helpful. Definitely enjoyed both flights.

There was no social distancing on the plane. Lots of people sneezing, etc so the coronavirus measures they are taking are not adequate. Very uncomfortable flight. Also hard to get customer service support by phone in English.

Pros: "I did not use this flight"
Cons: "This flight was one of my flights going back to LA from Japan. But They canceled the flight suddenly and so my whole trip was cancelled without notifications and booked me on other flights (which was scheduled 2days later) but I didn’t receive any call or emails or anything. I bought this tickets through KAYAK (budget air) and Even kayak (budget air)did not send any emails or notifications. Budget air account page showed I didn’t have any flights in the future and that was really confusing. I noticed this cancellation on the day I was supposed to leave. I actually think notifying customers regarding flight cancellation or changes was KAYAK’s (budget air) responsibility because I bout tickets through them and they knew the flight changes. I found out the flight operating by Jet star was cancelled by myself and called customer center. Jetstar customer Center call charges expensive but always busy and they make you wait so long with charging. I was able to manage my trip eventually but this experience was very frustrating. the airflight company and this KAYAK should work more cooperatively for customers."

Easy to board and fly, no frills. Yummy ramen on board.

It was for the most part a 10/10 they said they had entertainment options but all they had was old movies for streaming from the mid 2010’s so like 10 years ago

all good for a very budget flight - well priced and excellent service. Will fly again

Couple of the crew members were really nice and the rest are really rude and didn't help when we needed help, food was not worth it at all and most importantly there's no even entertainment system other than a very interruptive and slow internet and some movies.

I appreciate the economy price of the tickets. The long flight made the comfort level on the lower average side. Wi-Fi connection was not consistent but working. Overall, I would fly again with zip air but next time get the flat, premium seats with the amount of money I would save otherwise.

Comfortable seats and lucky no one was in middle seat. No water on the plane. Plane was on time and staff was fast.

You get what you pay for and nothing more. Wanted a cheap flight and that’s exactly what I got, though it’s human nature to wanting to feel like you got a good deal as well. There was none of that here. I was cheap and they were too. Got to my destination safely and that’s all that really matters.

Nice service. I wish it could provide hot water on the flight.

internet didn't work. No offer of drinks or snacks.

Flight was seamless. Free wifi helped pass the time. Food was okay, just make sure you pre order or pick something up from the airport

Food could of been better. Crew was pretty much average. It was raining a lot on arrival, had to take a bus to immigration building,

Flight was really good, considering the semi bad weather in MNL. Food was great. Crew kept offering throughout the flight. Wifi signal was intermittent though.

You have to pay $25 to get access to smoking lounge. One coffee and small bottle of water coupon provided. Max time 2 hrs for two entries total.

Everything was very good but seats are small for a big man!

Theairline, both at the terminal and during the entirety of the flight were kept at uncomfortably cold temps. Maybe between 55 and 60 f. Those who had traveled with the airline before donned puffer jackets, wool hats and pulled blankets from their carry-on bags. The seat back entertainment also failed on my trip, leaving me for 12 hrs. With nothing. Seats offered enough room (barely) for a 6'1" frame, but it was pretty tight But the worst offender was the uncomfortable temp..

Purchased exit row window seat for extra leg room and sleep. Worth the price. Attendants maintained restrooms regularly. No snacks/chips/nuts/cookies beyond what was served with meals.

Delayed, from morning flight, they moved to evening. And said, their earlier flight is already full but we can upgrade the seat

Manila airport is a dump. Very dirty and not comfortable at all

Not so good, my business seat is not working properly

Going to Dumaguette 4 times in a row I was late it's terrible

We were allowed to board early, seats were spacious and we arrived early.

The seats were dirty. Food on tray table. Late on my first flight and almost an hour early on the return. My driver was unable to adjust and I had to pay for different ground transportation.

I had excellent experienced flying with Cebu Pacific on my domestic flight. However, no food and beverage serve might be due to short travel time of 40 minutes.

No entertainment and not expected. Cabin was very cold which brought the comfort score down

Your check in lines were terrible everything else was great!

flight cancelled.. booked through orbitz, yet orbitz won't handle refunds.. never use them again..

It arrived 18 minutes early. Attendant are good. For baording , they should improve especially carrying thru bus.

Super delayed. Delayed to get the bus, delayed to get off the bus, delayed to take off.

exceptionally good with the particular flight because no delay. hope that happens for every flight

Boarding had us in a tunnel with no AC for 15 minutes. Not planned well. And you have to pay for water, get at airport

Service it was good Lower airfare and discount for loyal customer

Not a good experience. They did not have the food I ordered in advance. The crew is not offer a second snack on a 5 hour flight. The WiFi was either not working or was very difficult to connect to.

The flight was delayed by an hour . Traveling with 75 year old father was difficult and then when he asked for water he was asked to purchase :-) . Overall just an ok experience.

Overall service is good, the only thing I would like airasia to improve is there seating. Their seat handles are broken as well as the back rest

Boarding with air asia is excellent via organized lines by zone except when there is only 1 gate agent and no scanner, only by tearing tickets??? Crazy

The flight was supposed to depart at 9:25. It departed at 9:00. Im glad we were early and did not miss it.

They wouldn't even allow us to bring water from the fountain on board the aircraft.

Premium seats should have legroom this one didn't have it. I had 2 free checked bag but I got charged for while it shows on my reservation

Terrible airline! This airline just ruined our family vacation due to a 12 hours delay as a result of their operational issues.

Too many flight delays. Airport terminal serving Boracay needs upgrades.

Everything you need to know for your flight from Manila to Japan

Information on your arrival and departure airports

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