MNL - ENI

₱4,124 Find Cheap Flights from Manila to El Nido - Compare and Save

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Cheap Flights from Manila to El Nido (MNL-ENI)

 
Discover the best prices for you by selecting your travel dates on KAYAK.

Recent round-trip flight deals from Manila to El Nido

Tue, Feb 16 - Fri, Mar 12
Multiple Airlines Logo
12:45 pm - 4:40 pmMNL  Manila Ninoy Aquino Intl-ENI El Nido
3h 55m1 stop Boracay Godofredo P. Ramos
Multiple Airlines Logo
1:35 pm - 6:25 pmENI  El Nido-MNL Manila Ninoy Aquino Intl
4h 50m1 stop Bohol–Panglao Intl
₱13,622Multiple Airlines
Thu, Oct 29 - Thu, Nov 5
Multiple Airlines Logo
7:30 am - 4:40 pmMNL  Manila Ninoy Aquino Intl-ENI El Nido
9h 10m1 stop Boracay Godofredo P. Ramos
Multiple Airlines Logo
5:50 am - 2:30 pmENI  El Nido-MNL Manila Ninoy Aquino Intl
8h 40m1 stop Cebu City Mactan Intl
₱14,247Multiple Airlines
Sat, Feb 20 - Fri, Mar 12
Multiple Airlines Logo
12:45 pm - 4:40 pmMNL  Manila Ninoy Aquino Intl-ENI El Nido
3h 55m1 stop Boracay Godofredo P. Ramos
Multiple Airlines Logo
1:35 pm - 6:25 pmENI  El Nido-MNL Manila Ninoy Aquino Intl
4h 50m1 stop Bohol–Panglao Intl
₱14,559Multiple Airlines
Wed, Feb 17 - Fri, Mar 12
Multiple Airlines Logo
6:05 am - 10:25 amMNL  Manila Ninoy Aquino Intl-ENI El Nido
4h 20m1 stop Cebu City Mactan Intl
Multiple Airlines Logo
1:35 pm - 6:25 pmENI  El Nido-MNL Manila Ninoy Aquino Intl
4h 50m1 stop Bohol–Panglao Intl
₱14,622Multiple Airlines
Fri, Feb 19 - Fri, Mar 12
Multiple Airlines Logo
6:05 am - 10:25 amMNL  Manila Ninoy Aquino Intl-ENI El Nido
4h 20m1 stop Cebu City Mactan Intl
Multiple Airlines Logo
1:35 pm - 6:25 pmENI  El Nido-MNL Manila Ninoy Aquino Intl
4h 50m1 stop Bohol–Panglao Intl
₱14,747Multiple Airlines
Mon, Oct 26 - Thu, Oct 29
Multiple Airlines Logo
10:45 pm - 6:00 amMNL  Manila Ninoy Aquino Intl-ENI El Nido
7h 15m1 stop Cebu City Mactan Intl
Multiple Airlines Logo
6:20 am - 2:15 pmENI  El Nido-MNL Manila Ninoy Aquino Intl
7h 55m1 stop Cebu City Mactan Intl
₱14,747Multiple Airlines
Mon, Oct 26 - Thu, Oct 29
Multiple Airlines Logo
10:45 pm - 6:00 amMNL  Manila Ninoy Aquino Intl-ENI El Nido
7h 15m1 stop Cebu City Mactan Intl
Multiple Airlines Logo
6:20 am - 4:05 pmENI  El Nido-MNL Manila Ninoy Aquino Intl
9h 45m1 stop Cebu City Mactan Intl
₱14,809Multiple Airlines
Tue, Nov 3 - Sun, Nov 8
Multiple Airlines Logo
12:00 am - 6:00 amMNL  Manila Ninoy Aquino Intl-ENI El Nido
6h 00m1 stop Cebu City Mactan Intl
Multiple Airlines Logo
5:50 am - 2:30 pmENI  El Nido-MNL Manila Ninoy Aquino Intl
8h 40m1 stop Cebu City Mactan Intl
₱14,934Multiple Airlines
Mon, Oct 5 - Mon, Oct 12
Multiple Airlines Logo
12:35 pm - 5:00 pmMNL  Manila Ninoy Aquino Intl-ENI El Nido
4h 25m1 stop Boracay Godofredo P. Ramos
Multiple Airlines Logo
2:25 pm - 8:30 amENI  El Nido-MNL Manila Ninoy Aquino Intl
18h 05m1 stop Boracay Godofredo P. Ramos
₱14,997Multiple Airlines
Booking Insights

Price, demand, and travel trends for Manila to El Nido flights

Use KAYAK data on prices, travel dates, airlines, and seasonal trends to compare options and book flights from Manila to El Nido with more confidence.

What's the cheapest day of the week to fly from Manila to El Nido?

Thursday is the cheapest day of the week to fly from Manila to El Nido and is 2% cheaper than the average day. Saturday is the most expensive day, with flight prices 1% higher than average. Based on deals found by KAYAK users in the last 12 months.

What is the cheapest month to fly from Manila to El Nido?

  • September is the cheapest month to fly from Manila to El Nido at ₱13,122 round-trip.
  • December (₱18,246) and May (₱17,184) are the most expensive months.
  • The price difference between flying in the cheapest and most expensive months is 39% on average.
This is based on KAYAK aggregated and averaged internal data over the past 12 months.

When are prices from Manila to El Nido the cheapest?

Flights from Manila to El Nido are cheapest 24 weeks before departure. Booking in this window typically costs about 34% less than the average last-minute fare (within 2 weeks of the flight), based on KAYAK data.

Find deals

Key details for Manila to El Nido flights

Low season

July

Cheapest flight

₱4,124
Best time to beat the crowds but there is an average 6% increase in price.
Most popular time to fly (18% more expensive on average)
Flight from Manila to El Nido

When to book flights from Manila to El Nido

Are your dates flexible? Find out the best times to travel from Manila to El Nido based on our flight data from the last year. Discover the cheapest month and even day to fly.
Estimated round-trip price

Your Manila to El Nido flight questions, answered

Find helpful route details based on KAYAK data, including flight times, airports, airlines, and booking questions.

  • Which airports can I use when flying from Manila to El Nido?

    Flights from Manila to El Nido usually depart from Manila Ninoy Aquino Intl (MNL) and arrive at El Nido (ENI).

  • What cabin classes can I book on flights from Manila to El Nido?

    Only Economy Class is available on flights from Manila to El Nido.

  • How much can I save by taking a layover when flying from Manila to El Nido?

    On this route, direct flights are cheaper than layover options on average. Direct fares average ₱14,729 round-trip, compared to ₱19,362 via a layover through Boracay Godofredo P. Ramos (MPH).

  • Which aircraft model is used most often on flights from Manila to El Nido?

    The ATR 42 / ATR 72 family is used most often on this route, operated mainly by AirSWIFT. Other aircraft seen on the route include Airbus A320-100/200 variants.

  • Which airports do connecting flights from Manila to El Nido pass through?

    One-stop flights from Manila to El Nido most commonly connect through:

    • Cebu City Mactan Intl (CEB) - 87% of one-stop connections
    • Boracay Godofredo P. Ramos (MPH) - 11% of one-stop connections
    • Bohol–Panglao Intl (TAG) - 2% of one-stop connections

    Cebu City Mactan Intl (CEB) handles the largest share of one-stop connections on this route.

  • Can I save money by using flexible dates for flights from Manila to El Nido?

    Yes. Being flexible with your travel dates can save you up to 3% on the Manila to El Nido route. Thursday is the cheapest departure day at ₱15,309 round-trip on average, while Saturday is the most expensive at ₱15,746, a difference of ₱437. KAYAK's flexible dates feature shows options up to 3 days before and after your selected dates, making it easier to compare nearby fares.

  • At what point is a flight from Manila to El Nido considered delayed?

    A flight is considered delayed when it departs 15 minutes or more after its scheduled time. This is the standard used by the US Department of Transportation and most airline industry reporting. On the Manila to El Nido route, 12% of flights were delayed in the past 3 months, with delays averaging 1 hour 36 minutes.

  • How expensive are last-minute Manila to El Nido flights?

    Last-minute fares on this route - booked within 2 weeks of departure - run 17% above the route average of ₱15,516. Book 24 weeks before departure for the lowest fares.

  • How long is a flight from Manila to El Nido?

    There are currently no nonstop flights available from Manila to El Nido. Flights with 1 layover take between 4h 27m and 8h 04m in total, depending on the connection.

  • Do I need a passport to fly from Manila to El Nido?

    No, a passport is not required for this domestic route, but you will need a real ID-compliant driver's license, a state ID, or another TSA-accepted form of identification.

  • Have flight prices from Manila to El Nido changed much recently?

    Yes. Based on fares seen in the past 5 days, round-trip prices on this route showed a wide range, from about ₱13,622 to ₱35,304. That means the highest observed fare was about 3x higher than the lowest one.

  • How are flight prices from Manila to El Nido looking right now?

    One-way fares from Manila to El Nido are currently lower than usual. Average one-way flight prices are about ₱6,655, which is 32% below the typical average for this route.

  • How do delay rates compare for morning and evening flights from Manila to El Nido?

    Morning flights have the fewest delays on this route. Delays tend to pile up throughout the day as one late flight pushes the next, so earlier departures are usually more reliable.

  • How much time can I save by choosing a different layover airport from Manila to El Nido?

    Flying via Boracay Godofredo P. Ramos (MPH) gives the shortest average 1-stop total travel time at 4h 27m, compared with 5h 01m via Cebu City Mactan Intl (CEB) and 8h 04m via Bohol–Panglao Intl (TAG).

  • How much should I expect to pay for a Manila to El Nido flight?

    Round-trip flights from Manila to El Nido range from ₱13,152 to ₱20,672, with an average of ₱15,516 over the past 12 months. Anything below ₱13,152 counts as a good deal.

Your guide to booking Manila to El Nido flights

Get tips on when to book, when to fly and what to know before your trip.
  • If your dates can be flexible, aim for a Thursday departure instead of Saturday. On this route, Thursday flights average ₱15,309 - about ₱437 less than Saturday (3% savings) based on the last 12 months.
  • For the best chance at a low fare, aim to book around 24 weeks before you fly. On this route, that window historically saves about 34% versus last-minute pricing (KAYAK booking data, last 12 months).
  • If you can choose when to travel, plan your Manila to El Nido trip for September. Fares historically average ₱13,122 round-trip in that month - typically ₱5,124 less than the most expensive month, which is December (based on the last 12 months).
  • If arriving on time is high on your priority list, Cebu Pacific is the strongest pick on this route. 94% of Cebu Pacific flights from Manila to El Nido arrived on time in the past 3 months, slightly above the route's average on-time arrival rate of 88%. When flights on this route do arrive late, the average delay is 1 hour36 minutes, so choosing a carrier with strong on-time performance can make a difference on tight schedules.
  • If you're arriving late at night and need somewhere to stay, check out these hotels close to El Nido Airport.
    - Seda Lio El Nido Palawan
    - Cadlao Resort And Restaurant
    - Charlie's El Nido Managed by HII

More options for your flight from Manila to El Nido

Complete your trip to El Nido with a hotel stay or car rental

Hotels in El Nido