MNL - ENI

₱9,253 Find Cheap Flights from Manila to El Nido - Compare and Save

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Everything you should know

Cheapest round-trip
₱15,528
Typical prices: ₱14,464–₱23,874
Multiple Airlines
Fri 11/2Mon 11/5
MNL - ENI • 1 stop
Cheapest one-way
₱9,507
Typical prices: ₱8,658-₱12,996
Multiple Airlines
Thu 2/22
MNL - ENI • 1 stop
Avoid delays
Cebu Pacific
Most punctual • 94% on-time
Morning
Best time • Fewest delays
Insights
Insights
When to book
22 weeks
in advance
Our data shows that travelers who book at least 22 weeks in advance save around 37% compared to booking last minute.
Insights
Insights
When to travel
September
Cheapest • 37% price drop
February
Most popular
Good to know
+1
Good to know
+1
Top layover airports
Boracay Godofredo P. Ramos (MPH)
Cheapest • Avg ₱20,256 (round-trip)
Cebu City Mactan Intl (CEB)
Shortest trip • 5h 08m (one-way)
Insights
Insights
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We hope you love your trip to El Nido!
Flight Deals
Booking Insights
Flight Deals

Cheap Flights from Manila to El Nido (MNL-ENI)

 
Discover the best prices for you by selecting your travel dates on KAYAK.

Recent round-trip flight deals from Manila to El Nido

Mon, Nov 2 - Thu, Nov 5
Multiple Airlines Logo
11:15 pm - 6:00 amMNL  Manila Ninoy Aquino Intl-ENI El Nido
6h 45m1 stop Cebu City Mactan Intl
Multiple Airlines Logo
2:45 pm - 8:00 amENI  El Nido-MNL Manila Ninoy Aquino Intl
17h 15m1 stop Boracay Godofredo P. Ramos
₱15,528Multiple Airlines
3+ days ago
Tue, Mar 16 - Sat, Mar 20
Multiple Airlines Logo
12:45 pm - 5:20 pmMNL  Manila Ninoy Aquino Intl-ENI El Nido
4h 35m1 stop Boracay Godofredo P. Ramos
Multiple Airlines Logo
2:45 pm - 6:00 pmENI  El Nido-MNL Manila Ninoy Aquino Intl
3h 15m1 stop Boracay Godofredo P. Ramos
₱15,591Multiple Airlines
1 day ago
Fri, Mar 12 - Wed, Mar 17
Multiple Airlines Logo
11:15 pm - 6:00 amMNL  Manila Ninoy Aquino Intl-ENI El Nido
6h 45m1 stop Cebu City Mactan Intl
Multiple Airlines Logo
1:35 pm - 10:10 pmENI  El Nido-MNL Manila Ninoy Aquino Intl
8h 35m1 stop Bohol–Panglao Intl
₱15,718Multiple Airlines
5 hours ago
Thu, Mar 11 - Wed, Mar 17
Multiple Airlines Logo
4:15 am - 10:25 amMNL  Manila Ninoy Aquino Intl-ENI El Nido
6h 10m1 stop Cebu City Mactan Intl
Multiple Airlines Logo
1:35 pm - 10:10 pmENI  El Nido-MNL Manila Ninoy Aquino Intl
8h 35m1 stop Bohol–Panglao Intl
₱15,781Multiple Airlines
1 day ago
Thu, Mar 11 - Wed, Mar 17
Multiple Airlines Logo
4:15 am - 10:25 amMNL  Manila Ninoy Aquino Intl-ENI El Nido
6h 10m1 stop Cebu City Mactan Intl
Multiple Airlines Logo
1:35 pm - 10:10 pmENI  El Nido-MNL Manila Ninoy Aquino Intl
8h 35m1 stop Bohol–Panglao Intl
₱15,845Multiple Airlines
2 days ago
Thu, Mar 11 - Wed, Mar 17
Multiple Airlines Logo
4:15 am - 10:25 amMNL  Manila Ninoy Aquino Intl-ENI El Nido
6h 10m1 stop Cebu City Mactan Intl
Multiple Airlines Logo
1:35 pm - 10:10 pmENI  El Nido-MNL Manila Ninoy Aquino Intl
8h 35m1 stop Bohol–Panglao Intl
₱15,908Multiple Airlines
3+ days ago
Sun, Nov 8 - Sat, Nov 14
Multiple Airlines Logo
8:35 pm - 6:00 amMNL  Manila Ninoy Aquino Intl-ENI El Nido
9h 25m1 stop Cebu City Mactan Intl
Multiple Airlines Logo
5:50 am - 11:55 pmENI  El Nido-MNL Manila Ninoy Aquino Intl
18h 05m1 stop Cebu City Mactan Intl
₱16,415Multiple Airlines
3+ days ago
Tue, Feb 2 - Fri, Feb 5
Multiple Airlines Logo
11:30 am - 5:20 pmMNL  Manila Ninoy Aquino Intl-ENI El Nido
5h 50m1 stop Boracay Godofredo P. Ramos
Multiple Airlines Logo
8:25 am - 1:15 pmENI  El Nido-MNL Manila Ninoy Aquino Intl
4h 50m1 stop Bohol–Panglao Intl
₱16,605Multiple Airlines
3+ days ago
Sat, Jan 2 - Tue, Jan 5
Cebu Pacific Logo
11:40 pm - 6:00 amMNL  Manila Ninoy Aquino Intl-ENI El Nido
6h 20m1 stop Cebu City Mactan Intl
Cebu Pacific Logo
5:50 am - 1:50 pmENI  El Nido-MNL Manila Ninoy Aquino Intl
8h 00m1 stop Cebu City Mactan Intl
₱34,225Cebu Pacific
8 hours ago
Tue, Dec 29 - Sun, Jan 3
Cebu Pacific Logo
7:30 am - 4:40 pmMNL  Manila Ninoy Aquino Intl-ENI El Nido
9h 10m1 stop Boracay Godofredo P. Ramos
Cebu Pacific Logo
1:35 pm - 12:25 amENI  El Nido-MNL Manila Ninoy Aquino Intl
10h 50m1 stop Bohol–Panglao Intl
₱40,816Cebu Pacific
1 day ago
Booking Insights

Price, demand, and travel trends for Manila to El Nido flights

Use KAYAK data on prices, travel dates, airlines and seasonal trends to compare options and book flights with more confidence.

What's the cheapest day of the week to fly from Manila to El Nido?

Based on deals KAYAK users found in the last 12 months, Friday is the cheapest day of the week to fly from Manila to El Nido. It’s 4% cheaper than the average day, while Saturday is the most expensive, with prices 7% higher.

What’s the cheapest month to fly from Manila to El Nido?

•September is the cheapest month to fly from Manila to El Nido at ₱11,725 round-trip.
•May (₱21,739) and December (₱21,486) are the most expensive months.
•The price difference between flying in the cheapest and most expensive months is 85% on average.
This is based on KAYAK aggregated and averaged internal data over the past 12 months.

When are flights from Manila to El Nido the cheapest?

Flights from Manila to El Nido are cheapest 22 weeks before departure. Booking in this window typically costs about 37% less than the average last-minute fare (within 2 weeks of the flight), based on KAYAK data.

Find deals

Key details for Manila to El Nido flights

Low season

August

Cheapest flight

₱9,507
Beat the crowds with an average 53% drop in travelers.
The most popular month to fly with an average 51% increase in travelers.
One-way flight from Manila to El Nido

When to book flights from Manila to El Nido

Are your dates flexible? Find out the best times to travel from Manila to El Nido based on our flight data from the last year. Discover the cheapest month and even day to fly.
Estimated round-trip price

Your Manila to El Nido flight questions, answered

Find helpful answers about this route, including flight times, airports, airlines and booking tips.

  • What cabin classes can I book on flights from Manila to El Nido?

    Only Economy Class is available on flights from Manila to El Nido.

  • How long is a flight from Manila to El Nido?

    There are currently no nonstop flights available from Manila to El Nido. Flights with 1 layover take between 4h 17m and 7h 59m in total, depending on the connection.

  • Do I need a passport to fly from Manila to El Nido?

    No, a passport is not required for this domestic route, but you will need a real ID-compliant driver's license, a state ID or another TSA-accepted form of identification.

  • How much should I expect to pay for a Manila to El Nido flight?

    Round-trip flights from Manila to El Nido range from ₱14,464 to ₱23,874, with an average of ₱18,628 over the past 12 months. Anything below ₱14,464 counts as a good deal.

  • How expensive are last-minute Manila to El Nido flights?

    Last-minute fares on this route (booked within two weeks of departure) run 15% above the ₱18,628 route average. Book 22 weeks before departure for the lowest fares.

  • How much can I save by taking a layover when flying from Manila to El Nido?

    On this route, direct flights are cheaper than layover options on average. Direct fares average ₱16,118 round-trip, compared to ₱20,256 via a layover through Boracay Godofredo P. Ramos (MPH).

  • Which aircraft model is used most often on flights from Manila to El Nido?

    The ATR 42 / ATR 72 family is used most often on this route, operated mainly by AirSWIFT. Other aircraft seen on the route include Airbus A320-100/200 variants.

  • Have flight prices from Manila to El Nido changed much recently?

    Yes. Based on fares seen in the past 5 days, round-trip prices on this route showed a wide range, from about ₱15,528 to ₱41,347. That means the highest observed fare was about 3x higher than the lowest one.

  • How are flight prices from Manila to El Nido looking right now?

    One-way fares from Manila to El Nido are currently lower than usual. Average one-way flight prices are about ₱10,578, which is 5% below the typical average for this route.

  • Which airports can I use when flying from Manila to El Nido?

    Flights from Manila to El Nido usually depart from Manila Ninoy Aquino Intl (MNL) and arrive at El Nido (ENI).

  • What time of day has the fewest delays on flights from Manila to El Nido?

    Morning flights have the fewest delays on this route, while evening departures tend to have the most.

  • At what point is a flight from Manila to El Nido considered delayed?

    A flight is considered delayed when it departs 15 minutes or more after its scheduled time. This is the standard used by the US Department of Transportation and most airline industry reporting. On the Manila to El Nido route, 12% of flights were delayed in the past 3 months, with delays averaging 1h 37m.

  • Which airports do connecting flights from Manila to El Nido pass through?

    One-stop flights from Manila to El Nido most commonly connect through:

    • Cebu City Mactan Intl (CEB) - 87% of one-stop connections
    • Boracay Godofredo P. Ramos (MPH) - 12% of one-stop connections
    • Bohol–Panglao Intl (TAG) - 2% of one-stop connections

  • Can I save money by using flexible dates for flights from Manila to El Nido?

    Yes. Flexible dates can save you up to 11% on flights from Manila to El Nido. Friday is the cheapest departure day at ₱17,936 round-trip on average, while Saturday is the most expensive at ₱20,028, a difference of ₱2,092.

    KAYAK's flexible dates feature shows options up to 3 days before and after your selected dates, making it easier to compare nearby fares.

  • How much time can I save by choosing a different layover airport from Manila to El Nido?

    Flying via Boracay Godofredo P. Ramos (MPH) gives the shortest average 1-stop total travel time at 4h 17m, compared with 5h 08m via Cebu City Mactan Intl (CEB) and 7h 59m via Bohol–Panglao Intl (TAG).

Your guide to booking Manila to El Nido flights

Get tips on when to book, when to fly and what to know before your trip.
  • If your dates are flexible, aim for a Friday departure and avoid flying on Saturday. On this route, Friday flights average ₱17,936, about ₱2,092 less than Saturday fares (10% savings) based on the last 12 months.
  • For the best chance at a low fare, aim to book around 22 weeks before you fly. On this route, that window historically saves about 37% versus last-minute pricing (KAYAK booking data, last 12 months).
  • If you can choose when to travel, plan your Manila to El Nido trip for September. Fares historically average ₱11,725 round-trip in that month - typically ₱10,014 less than the most expensive month, which is May (based on the last 12 months).
  • For the best chance of arriving on time, fly with Cebu Pacific. Over the past three months, 94% of Cebu Pacific flights from Manila to El Nido arrived on time, slightly above the route average of 88%. When flights on this route arrive late, they're delayed by an average of 1h 37m, so choosing an airline with strong on-time performance can make a difference if you're on a tight schedule.
  • If you're arriving late at night and need somewhere to stay, check out these hotels close to El Nido Airport.

    • Seda Lio El Nido Palawan
    • Charlie's El Nido Managed by HII
    • Cadlao Resort And Restaurant

More options for your flight from Manila to El Nido

Complete your trip to El Nido with a hotel stay or car rental

Hotels in El Nido